@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0584: (2015-12-02 )
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAADFEDADIAIVATYTYGDGDLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40.----...-.------...50........60.--.--......70........80........90........100.......110.......120.......130.......140.....-----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MA
L
A
K
I
V
Y
A
SMTG
N
T
E
E
I
A
D
I
V
A
D
K
L
R
DLGL
D
V
E
V
E
E
C
T
M
VD----AAD-F------EDA
D
I
A
I
V
A
T
Y
T
YGDG--D--L
P
D
E
I
V
D
F
Y
E
D
L
A
EVDLSG
K
V
Y
G
V
VGSG
D
T
F
Y
D
Y
F
C
K
S
V
D
E
F
E
A
Q
F
A
LTGAQKGA
D
C
V
K
V
DLAAED
E
D
I
E
N
L
E
A
F
A
E
E
I
A
S
KLN-----
21
PsiBlast_CBE
87.29
35%
-100
- C2 -
4HEQ
1
FLAV_DESGI
B:
[2-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
G
V
A
E
A
I
A
K
T
L
N
S
E
G
M
-----
E
T
T
V
V
N
----
V
A
D
-
V
TAPGLA
E
G
Y
D
V
V
L
L
G
C
S
T
W
G
D
D
--
E
IE
L
Q
E
D
F
V
P
L
Y
E
D
L
D
R
A
G
L
K
D
K
K
V
G
V
F
G
C
G
D
S
S
Y
T
Y
F
C
G
A
V
D
V
I
E
K
K
A
E
E
L
G
A
T
L
V
A
S
S
L
K
I
D
--
G
E
P
D
S
A
E
V
L
D
-
W
A
R
E
V
L
A
R
V
------
8
PsiBlast_PDB
87.08
35%
-98
- C2 -
4HEQ
1
FLAV_DESGI
A:
[2-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
G
V
A
E
A
I
A
K
T
L
N
S
E
G
M
-----
E
T
T
V
V
N
----
V
A
D
-
V
TAPGLA
E
G
Y
D
V
V
L
L
G
C
S
T
W
G
D
D
--
E
IE
L
Q
E
D
F
V
P
L
Y
E
D
L
D
R
A
G
L
K
D
K
K
V
G
V
F
G
C
G
D
S
S
Y
T
Y
F
C
G
A
V
D
V
I
E
K
K
A
E
E
L
G
A
T
L
V
A
S
S
L
K
I
D
--
G
E
P
D
S
A
E
V
L
D
-
W
A
R
E
V
L
A
R
V
------
63
Fugue
82.94
24%
-84
- C2 -
1E5D
4
ROO_DESGI
A:
[2-402]
QATKIIDG
F
H
L
V
G
A
I
DWNSRDFHGYTLSPM
G
T
T
Y
N
A
Y
L
V
E
D
EK
T
T
L
F
D
TVKAEY
K
G
E
L
L
C
G
I
A
S
V
IDPKKID
Y
L
V
I
QHLELDHAGA
L
P
A
L
I
E
A
C
QPE
K
I
F
T
S
S
L
G
Q
K
A
M
E
S
H
FHYKDWP
V
Q
V
V
K
HG
E
T
L
S
LGK
R
T
V
T
F
Y
E
TRMLHWPD
S
M
V
S
W
FADEKVLISNDIFGQNIAASERFSDQIP
V
H
T
L
E
R
A
M
R
E
Y
Y
A
N
IVNPY
A
P
Q
T
L
K
A
I
E
T
L
V
G
A
GVAPE
F
I
C
P
DHGVIFRG
A
D
Q
C
T
F
A
V
Q
K
Y
V
E
Y
A
E
QKP
T
N
K
V
V
I
F
Y
D
S
M
W
H
S
T
E
K
M
A
R
V
L
A
E
S
F
R
D
E
G
C
T
V
K
L
M
W
C
K
A
C
H
H
S
Q
I
M
S
E
-
I
------
S
D
A
G
A
V
I
V
G
S
P
T
H
N
-
N
--
G
--
I
L
P
Y
V
A
G
T
L
Q
Y
I
K
G
L
R
P
Q
N
K
I
G
G
A
F
G
S
F
G
----
W
S
G
E
S
T
K
V
L
A
E
W
L
T
G
M
G
F
D
M
P
A
T
P
V
K
V
K
N
V
P
T
H
A
D
Y
E
Q
L
K
T
M
A
Q
T
I
A
R
A
L
K
A
K
L
A
A
4
PsiBlast_PDB
81.24
35%
-102
- C2 -
1WSW
1
FLAV_DESVH
A:
[2-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
C
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
5
PsiBlast_PDB
81.04
35%
-103
- C2 -
1XYV
1
FLAV_DESVH
A:
[2-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
C
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
6
PsiBlast_PDB
81.03
35%
-104
- C2 -
1XYY
1
FLAV_DESVH
A:
[2-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
CI
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
14
PsiBlast_PDB
79.55
34%
-103
- C2 -
4FX2
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
3
PsiBlast_PDB
79.26
35%
-99
- C2 -
1WSB
1
FLAV_DESVH
A:
[2-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
C
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
18
PsiBlast_PDB
78.62
34%
-95
- C2 -
1I1O
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
H
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
10
PsiBlast_PDB
78.39
34%
-99
- C2 -
1XT6
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
C
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
16
PsiBlast_PDB
78.33
34%
-96
- C2 -
1J9G
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
C
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
11
PsiBlast_PDB
77.89
34%
-98
- C2 -
1J8Q
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
9
PsiBlast_PDB
77.85
34%
-98
- C2 -
1J9E
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
C
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
7
PsiBlast_PDB
76.64
33%
-100
- C2 -
1FX1
1
FLAV_DESVH
A:
[2-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
Q
L
A
N
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
SI
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
12
PsiBlast_PDB
76.51
34%
-101
- C2 -
2FX2
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
13
PsiBlast_PDB
76.40
34%
-97
- C2 -
3FX2
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
15
PsiBlast_PDB
75.85
34%
-104
- C2 -
5FX2
1
FLAV_DESVH
A:
[1-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
19
PsiBlast_PDB
75.65
33%
-104
- C2 -
1F4P
1
FLAV_DESVH
A:
[3-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
SI
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
W
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
24
PsiBlast_CBE
75.63
33%
-102
- C2 -
1C7F
1
FLAV_DESVH
A:
[3-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
S
I
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
E
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------
17
PsiBlast_PDB
75.56
34%
-102
- C2 -
1BU5
2
FLAV_DESVH
A:
[3-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
I
V
Y
G
S
T
T
G
N
T
E
Y
T
A
E
T
I
A
R
E
L
A
D
A
G
Y
E
V
D
S
R
D
A
A
S
V
E
----
A
G
G
L
F
------
E
G
F
D
L
V
L
L
G
C
S
T
W
G
D
D
SI
E
--
L
Q
D
D
F
I
P
L
F
D
S
L
E
E
T
G
A
Q
G
R
K
V
A
C
F
G
C
G
D
S
S
Y
E
Y
F
C
G
A
V
D
A
I
E
E
K
L
K
N
L
G
A
E
I
V
Q
D
G
L
R
I
D
G
D
P
R
A
A
R
D
D
I
V
G
W
A
H
D
V
R
G
A
I
-------