@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0030: (2016-04-18 )
MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMTGYAHGELADRVNLAITALRDEVEAENRARYGGRLQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-....-.10---..-..-.....20.......-.30-.........40.......--.--50-..----------------......-----------.60..-......70--------.-....-----...80..-------------......----.90........100.-......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVSG-SDSR-SE----PS-QL-S
D
R
D
L
V
E
S
V
L
R
D
L
S
-
E
A
--
A
D
K
W
E
A
L
V
TQ
A
E
T
V
T
Y
S
V
--D--L--G
D
----------------
V
R
A
V
AN-----------SDG
R
L
-
L
E
L
T
LHPG--------V-MTGY-----AHG
E
-
L
A
-------------
D
R
V
N
L
A
----
I
T
A
L
R
D
E
V
E
A
E
N
R
AR-YGGRLQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
82.29
23%
-56
- C3 -
2KL8
-
?
A:
[1-85]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
M
D
-
I
R
F
R
-
G
D
-----------
D
L
E
A
F
E
K
A
L
K
E
M
I
-
R
Q
--
A
R
K
F
A
G
------
T
V
T
Y
T
L
--
D
------------------------------------------
G
N
D
-
L
E
I
R
I
T
G
-----------
V
P
E
Q
-----
V
R
K
E
-
L
A
-------------
K
E
A
E
R
L
----
A
K
E
F
N
I
T
V
T
Y
T
I
R
L
E
-
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
77.26
9%
-69
- C3 -
4FQG
1
TCRG1_HUMAN
A:
[1-186]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHM
K
R
E
E
A
I
Q
N
F
K
A
L
L
S
D
MVRSSDVS
W
S
D
T
R
R
T
L
R
K
-
D
H
R
W
-
E
S
GSLL
E
R
-
E
E
-
K
E
K
L
F
N
E
H
I
E
A
L
T
K
-
K
K
--
R
E
H
F
R
Q
L
L
D
E
T
S
A
I
T
L
T
S
--
T
--
W
--
K
E
----------------
V
K
K
I
I
K
-----------
E
D
P
R
C
-
I
K
F
S
S
S
D
R
--------
K
-
K
Q
R
E
-----
F
E
E
Y
-
I
R
-------------
D
K
Y
I
T
A
----
K
A
D
F
R
T
L
L
K
E
T
K
F
I
T
-
Y
R
S
K
K
L
I
Q
E
SDQ
H
L
K
D
V
E
K
I
L
QND
K
R
Y
L
V
L
DCV
P
E
E
R
R
K
L
I
V
A
Y
V
D
D--------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
72.20
16%
-69
- C2 -
1YBX
2
Y2143_CLOTH
A:
[43-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
N
L
V
K
Q
A
Q
-
K
M
--
Q
R
D
M
E
R
V
Q
E
E
L
K
E
K
T
V
E
A
S
A
G
--
G
--
G
A
----------------
V
T
V
V
A
T
-----------
G
R
K
D
I
-
K
E
I
T
I
K
P
E
--------
V
-
V
D
P
D
-----
D
V
E
M
-
L
Q
-------------
D
L
I
L
A
A
----
V
N
E
A
L
R
K
A
D
E
M
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
71.18
36%
-51
* C4 *
1JND
1
IDGF2_DROME
A:
[179-238]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----------------
V
K
D
S
L
R
-----------
A
D
G
F
L
-
L
S
L
T
V
L
P
N
--------
V
-
N
S
T
W
YFD
I
P
A
L
N
G
-
L
V
-------------
D
F
V
N
L
A
TFDF
L
T
P
A
R
N
P
E
E
A
D
Y
S
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
68.50
36%
-42
- C4 -
1JNE
1
IDGF2_DROME
A:
[179-238]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----------------
V
K
D
S
L
R
-----------
A
D
G
F
L
-
L
S
L
T
V
L
P
N
--------
V
-
N
S
T
W
YFDIP
A
L
N
G
-
L
V
-------------
D
F
V
N
L
A
TFDF
L
T
P
A
R
N
P
E
E
A
D
Y
S
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
67.36
14%
-64
- C2 -
3F42
4
Y035_HELPY
A:
[7-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
G
G
L
L
D
-
G
M
--
K
K
E
F
S
Q
L
E
E
K
N
K
D
T
I
H
T
S
--
K
S
G
G
--
G
M
----------------
V
S
V
S
F
N
-----------
G
L
G
E
L
-
V
D
L
Q
I
D
D
S
--------
L
-
L
E
-------
D
K
E
A
-
M
Q
-------------
I
Y
L
M
S
A
----
L
N
D
G
Y
K
A
V
E
E
N
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
64.68
16%
-2
- C3 -
1I35
-
BYR2_SCHPO
A:
[1-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
I
L
R
F
I
A
C
N
-
G
Q
T
R
-
A
V
----
Q
S
-
R
G
-
D
Y
Q
K
T
L
A
I
A
L
K
K
F
S
L
E
D
--
A
S
K
F
I
V
C
V
S
Q
S
S
R
I
K
L
I
T
--
E
--
E
--
E
F
----------------
K
Q
I
C
F
N
-----------
S
S
S
P
-------------------------------------------------
E
R
D
R
L
I
----
I
V
P
K
E
K
P
C
P
S
F
E
D
L
R
-
R
S
W
E
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
64.20
39%
-15
- C2 -
1TMX
4
CHQB_NOCSI
A:
[6-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
----
E
Q
-
Q
A
-
R
E
Q
D
L
V
E
R
V
L
R
S
F
D
-
A
T
--
A
D
P
R
L
K
Q
V
M
Q
A
L
T
R
H
L
H
A
--
F
--
L
--
R
E
----------------
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
58.37
35%
-29
- C2 -
3GL5
1
?
A:
[124-177]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
G
--
N
--
F
--
A
D
----------------
E
R
S
V
F
N
-----------
D
D
E
R
L
-
V
E
L
A
V
G
A
G
--------
L
-
D
A
E
E
-----
V
R
A
V
-
L
A
-------------
D
P
A
A
Y
A
---------
D
E
V
R
A
D
E
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
57.72
14%
10
- C2 -
1J8B
-
Y442_HAEIN
A:
[7-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
G
L
M
K
Q
A
Q
-
Q
Q
----
E
K
M
Q
K
M
Q
E
E
------------------------
I
A
Q
L
E
V
T
G
E
S
--
G
--
A
--
G
L
----------------
V
K
I
T
I
N
-----------
G
A
H
N
C
-
R
R
I
D
I
D
P
S
--------
L
M
E
D
--------
D
K
E
M
L
E
-------------
D
L
I
A
A
A
----
F
N
D
A
V
R
R
A
E
E
L
Q
K
E
K
M
A
S
V
T
A
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
57.63
10%
-46
- C3 -
3E0Y
1
?
B:
[10-174]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EHLE
I
I
S
L
-
E
E
I
S
M
L
V
----
S
S
-
D
F
-
D
L
P
E
V
L
Q
H
V
T
A
K
V
A
-
T
Q
LK
V
S
V
C
N
I
Y
L
R
E
G
D
E
V
V
L
A
A
--
T
--
H
--
G
F
DPAFIG
K
I
R
I
K
IGDGI
T
G
S
V
A
R
DG
Q
Y
I
S
L
S
R
AS
Q
K
Y
N
S
M
L
S
F
P
I
G
D
K
KEVY
G
V
I
N
L
-
N
T
T
S
-----
I
R
S
F
-
H
E
-------------
D
E
I
Y
F
V
----
S
I
I
A
N
L
I
L
T
A
I
K
L
R
Q
-
Q
V
A
S
S
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
55.50
19%
50
- C3 -
4OUA
8
?
B:
[4-557]
LLATVGPTGGVKNRLDIVDFVRDEKFFTLYIRALQAIQDKDQSDYSSFFQLSGIHGLPFTPWAKPKDTPTVPYESGYCTHSQVLFPTWHRVYVSIYEQILQEAAKGIAKKFTVHKKEWAQAAEDLRQPYWDTGFALVPPDEIIKLEQVKITNYDGTKITVRNPILRYSFHPIDPSFNGYPNFDTWKTTVRNPDADKKENIPALIGKLDLEADSTREKTYNMLKFNANWEAFSNHGEFDDTHANSLEAVHDDIHGFVGRGAIRGHMTHALFAAFDPIFWLHHSNVDRHLSLWQALYPGVWVTQGP
E
R
E
G
-
S
M
G
F
-
A
P
----
G
T
-
E
L
-
N
K
D
S
A
L
E
P
F
Y
E
T
E
D
-
K
-----
P
W
T
-----------
S
V
--
P
--
L
--
T
D
----------------
T
A
L
L
---------------------------------------
N
Y
-----
S
Y
P
D
-
F
D
-------------
K
V
K
G
G
T
----
P
D
L
V
R
D
Y
I
N
D
H
I
D
R
R
-
Y
G
I
K
K
S
EGGKNPAQDLLSDFKGVTHDHNEDLKMFDWTIQASWKKFELDDSFAIIFYFAADGSTNVTKENYIGSINIFRGTTPTNCANCRTQDNLVQEGFVHLDRFIARDLDTFDPQAVHRYLKEKKLSYKVVADDHSVTLKSLRIRVQGRPLHLPPGVSFPRLDKNIPIVNFDDVLDLVTG
45
HHSearch
54.22
24%
-61
- C2 -
1FAF
-
LT_POVM3
A:
[37-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
L
L
L
H
P
D
--------
K
--
G
G
-------
S
H
A
-
L
M
-------------
Q
E
L
N
S
L
----
W
G
T
F
K
T
E
V
Y
N
L
R
M
N
L
-
G
G
T
G
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
54.06
13%
-19
- C2 -
1J8B
-
Y442_HAEIN
A:
[8-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
L
M
K
Q
A
Q
-
Q
---
Q
E
K
M
Q
K
M
Q
E
E
I
A
Q
L
E
V
T
G
--
E
SG
A
--
G
L
----------------
V
K
I
T
I
N
-----------
G
A
H
N
C
-
R
R
I
D
I
D
P
S
--------
L
-
M
E
-
D
-----
D
K
E
M
-
L
E
-------------
D
L
I
A
A
A
----
F
N
D
A
V
R
R
A
E
E
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
52.03
28%
-41
- C2 -
2E9F
1
ARLY_THET8
A:
[152-200]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
--------
V
-
L
P
G
Y
-----
T
H
L
Q
-
R
A
QPVL
L
A
H
W
F
L
A
Y
Y
E
M
L
K
R
D
----
A
G
R
L
E
D
A
K
E
R
L
N
E
S
P
-
L
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
58
Fugue
49.37
30%
24
* C3 *
3PZD
-
B:
[1-36]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
K
P
T
-
E
D
----
P
A
-
S
V
-
Y
E
Q
D
-------
D
L
S
-
E
Q
--
M
A
S
L
E
G
L
M
K
Q
L
N
A
I
T
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
49.08
33%
-58
- C2 -
2VLG
1
KINA_BACSU
A:
[10-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----------------
I
H
A
V
L
A
-----------
S
N
G
R
I
-
I
Y
I
S
A
N
S
K
--------
L
-
H
L
G
Y
-----
L
Q
G
E
-
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
48.76
30%
66
- C2 -
1EU1
2
DSTOR_RHOSH
A:
[644-697]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
----
P
K
-
S
R
-
L
H
S
Q
L
N
G
T
S
L
R
D
L
Y
-
A
V
--
A
G
H
E
P
C
L
I
N
P
A
D
A
A
A
R
G
I
--
A
--
D
--
G
D
----------------
V
L
R
V
F
N
-----------
D
R
G
Q
I
-
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
42.93
8%
-13
- C3 -
2EUA
1
MENF_ECOLI
A:
[2-429]
-------------------------------------------Q
S
L
T
T
A
L
E
N
L
L
R
H
L
S
QEIPA
T
P
G
I
R
V
I
D
I
P
F
P
LKDAFD
A
L
S
W
L
A
S
QQTYP
Q
F
Y
W
Q
Q
RNGD
E
E
A
V
V
L
G
AITRFTS
L
D
Q
A
Q
R
F
L
R
Q
H
PEHADL
R
I
W
G
L
N
A
FDPS
Q
G
N
L
L
LPR
L
E
W
R
R
C
GG
K
A
T
L
R
L
T
L
F
S
ESS
L
Q
H
D
A
I
Q
A
K
E
F
I
A
T
LVSI
K
P
L
P
G
L
HLTTT
R
E
Q
H
WPD
K
T
G
W
T
Q
L
I
E
L
A
T
K
T
I
A
E
GELD
K
V
V
L
A
R
A
T
D
L
H
F
ASPVN
A
A
A
M
M
A
A
S
R
R
L
N
LN
C
Y
H
F
Y
M
A
FDGE
N
A
F
L
GSSPERL
W
R
R
R
DK
A
L
R
T
E
A
L
A
G
T
V
A
N
N
P
D
D
K
-
Q
A
Q
Q
-
L
G
----
E
W
-
L
M
-
A
D
D
K
N
Q
R
E
N
M
L
V
V
E
-
D
I
--
C
Q
R
L
Q
A
D
T
Q
T
L
D
V
L
P
P
Q
V
--
L
--
R
L
R
K
V
----------------
Q
H
L
R
R
C
-----------
I
W
T
S
L
-
N
K
A
D
D
V
I
C
--------
L
-
H
Q
L
Q
-----
P
T
A
A
-
V
A
-------------
G
L
P
R
D
L
----
A
R
Q
F
I
A
R
H
E
P
F
T
R
E
W
-
Y
A
G
S
A
G
Y
L
S
LQ
Q
S
E
F
C
VSLR
S
A
K
I
S
GN
V
V
R
L
Y
A
G
A
G
I
V
RGSD
P
E
Q
E
W
Q
E
I
D
N
K
A
A
G
L
R
T
L
L
Q-----------------------------------------------------------------------------------------------------------------------
35
HHSearch
41.88
30%
-19
- C2 -
1GHH
-
DINI_ECOLI
A:
[58-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
K
Q
R
I
S
E
I
L
Q
E
T
W
-
E
S
--
A
D
D
W
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