@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2412: (2016-02-07 )
MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------.......-..10........20...-------.....30....-----------....40........50...---....---.60........70.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------MTSVFDR-D
D
I
Q
F
Q
V
V
VNHEEQYSI-------
W
P
E
Y
K
E
I
P
Q
G
W
-----------
R
A
A
G
KSG
L
K
K
D
C
L
A
Y
I
E
E
V
---
W
TDM---R
P
L
S
L
R
Q
H
M
D
K
AAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
83.84
100%
-99
- C4 -
2PST
-
?
X:
[8-68]
-----------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Q
F
Q
V
V
V
N
H
E
E
Q
Y
S
I
-------
W
P
E
Y
K
E
I
P
Q
G
W
-----------
R
A
A
G
K
S
G
L
K
K
D
C
L
A
Y
I
E
E
V
---
W
T
D
M
---
R
P
L
S
L
R
Q
H
M
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
83.84
100%
-99
- C4 -
2PST
-
?
X:
[8-68]
-----------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Q
F
Q
V
V
V
N
H
E
E
Q
Y
S
I
-------
W
P
E
Y
K
E
I
P
Q
G
W
-----------
R
A
A
G
K
S
G
L
K
K
D
C
L
A
Y
I
E
E
V
---
W
T
D
M
---
R
P
L
S
L
R
Q
H
M
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
83.84
100%
-99
- C4 -
2PST
-
?
X:
[8-68]
-----------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Q
F
Q
V
V
V
N
H
E
E
Q
Y
S
I
-------
W
P
E
Y
K
E
I
P
Q
G
W
-----------
R
A
A
G
K
S
G
L
K
K
D
C
L
A
Y
I
E
E
V
---
W
T
D
M
---
R
P
L
S
L
R
Q
H
M
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
83.49
100%
-84
- C4 -
2GPF
-
?
A:
[1-72]
---------------------------------------------------------------------------------------------------------------------------------
M
T
S
V
F
D
R
-
D
D
I
Q
F
Q
V
V
V
N
H
E
E
Q
Y
S
I
-------
W
P
E
Y
K
E
I
P
Q
G
W
-----------
R
A
A
G
K
S
G
L
K
K
D
C
L
A
Y
I
E
E
V
---
W
T
D
M
---
R
P
L
S
L
R
Q
H
M
D
K
A
A
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.49
100%
-84
- C4 -
2GPF
-
?
A:
[1-72]
---------------------------------------------------------------------------------------------------------------------------------
M
T
S
V
F
D
R
-
D
D
I
Q
F
Q
V
V
V
N
H
E
E
Q
Y
S
I
-------
W
P
E
Y
K
E
I
P
Q
G
W
-----------
R
A
A
G
K
S
G
L
K
K
D
C
L
A
Y
I
E
E
V
---
W
T
D
M
---
R
P
L
S
L
R
Q
H
M
D
K
A
A
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
69.08
45%
-90
* C4 *
2KHR
-
MBTH_MYCTU
A:
[5-73]
---------------------------------------------------------------------------------------------------------------------------------
S
T
N
P
F
D
D
-
D
N
G
A
F
F
V
L
V
N
D
E
D
Q
H
S
L
-------
W
P
V
F
A
D
I
P
A
G
W
-----------
R
V
V
H
G
E
A
S
R
A
A
C
L
D
Y
V
E
K
N
---
W
T
D
L
---
R
P
K
S
L
R
D
A
M
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
68.28
46%
-92
- C4 -
2KHR
-
MBTH_MYCTU
A:
[6-71]
----------------------------------------------------------------------------------------------------------------------------------
T
N
P
F
D
D
-
D
N
G
A
F
F
V
L
V
N
D
E
D
Q
H
S
L
-------
W
P
V
F
A
D
I
P
A
G
W
-----------
R
V
V
H
G
E
A
S
R
A
A
C
L
D
Y
V
E
K
N
---
W
T
D
L
---
R
P
K
S
L
R
D
A
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_CBE
63.60
33%
-75
- C4 -
4GR5
1
?
C:
[5-69]
----------------------------------------------------------------------------------------------------------------------------------
S
N
P
F
E
E
-
Y
D
G
G
H
V
V
L
T
D
A
L
G
R
H
S
L
-------
W
P
A
G
I
A
V
P
A
G
W
-----------
S
V
R
H
G
T
D
S
R
E
G
C
L
A
H
I
E
H
H
---
W
T
D
L
---
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
61.84
33%
-79
- C4 -
4GR4
-
?
A:
[4-75]
---------------------------------------------------------------------------------------------------------------------------------
M
S
N
P
F
E
E
-
Y
D
G
G
H
V
V
L
T
D
A
L
G
R
H
S
L
-------
W
P
A
G
I
A
V
P
A
G
W
-----------
S
V
R
H
G
T
D
S
R
E
G
C
L
A
H
I
E
H
H
---
W
T
D
L
---
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.34
43%
-78
- C4 -
2LPD
-
?
A:
[23-87]
-----------------------------------------------------------------------------------------------------------------------------------------
D
D
E
L
Y
F
V
V
R
N
N
E
G
Q
Y
S
V
-------
W
M
D
G
R
S
L
P
A
G
W
-----------
E
T
V
G
E
P
A
T
K
Q
Q
C
L
Q
R
I
E
Q
L
---
W
T
D
M
---
V
P
A
S
V
R
E
H
L
N
Q
H
S
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
60.87
33%
-82
- C4 -
4GR5
2
?
D:
[6-76]
-----------------------------------------------------------------------------------------------------------------------------------
N
P
F
E
E
-
Y
D
G
G
H
V
V
L
T
D
A
L
G
R
H
S
L
-------
W
P
A
G
I
A
V
P
A
G
W
-----------
S
V
R
H
G
T
D
S
R
E
G
C
L
A
H
I
E
H
H
---
W
T
D
L
---
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
60.27
38%
-66
- C4 -
2LPD
-
?
A:
[16-86]
---------------------------------------------------------------------------------------------------------------------------------
T
Q
G
P
G
S
M
-
D
D
E
L
Y
F
V
V
R
N
N
E
G
Q
Y
S
V
-------
W
M
D
G
R
S
L
P
A
G
W
-----------
E
T
V
G
E
P
A
T
K
Q
Q
C
L
Q
R
I
E
Q
L
---
W
T
D
M
---
V
P
A
S
V
R
E
H
L
N
Q
H
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.81
33%
-74
- C4 -
4GR5
1
?
A:
[5-75]
----------------------------------------------------------------------------------------------------------------------------------
S
N
P
F
E
E
-
Y
D
G
G
H
V
V
L
T
D
A
L
G
R
H
S
L
-------
W
P
A
G
I
A
V
P
A
G
W
-----------
S
V
R
H
G
T
D
S
R
E
G
C
L
A
H
I
E
H
H
---
W
T
D
L
---
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
57.71
33%
-73
- C4 -
4GR5
2
?
B:
[4-73]
---------------------------------------------------------------------------------------------------------------------------------
M
S
N
P
F
E
E
-
Y
D
G
G
H
V
V
L
T
D
A
L
G
R
H
S
L
-------
W
P
A
G
I
A
V
P
A
G
W
-----------
S
V
R
H
G
T
D
S
R
E
G
C
L
A
H
I
E
H
H
---
W
T
D
L
---
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
49.36
28%
-34
- C5 -
2DST
-
?
A:
[2-123]
-----------------------------------------------------------------------------------------------------------------------R
R
A
G
Y
L
HLYG
L
N
L
V
F
D
R
-
V
G
K
G
P
P
V
L
L
V
A
E
E
-
A
S
R
-------
W
P
E
--
A
L
P
E
G
Y
A
F
Y
L
L
DLPGYG
R
T
E
G
P
R
M
A
P
E
E
L
A
H
F
V
A
G
F
---
A
V
M
M
NLG
A
P
W
V
L
L
R
G
L
G
L
A
L
G
P
H
L
E
A
L
G
L
R
A
L
P
AEGVE
V
A
E
V
L
S
S
K
L
S
YG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
42.67
23%
-14
* C5 *
4WBD
3
BSHC_BACSU
A:
[2-541]
H
M
Q
L
T
E
L
S
I
K
N
QN
V
F
V
Q
H
Y
I
D
GKEEMSSFFDYSIHHKD
M
W
R
E
R
L
E
D
L
S
S
RFFA
R
E
E
L
A
A
Y
L
T
S
Y
H
NKFGS
S
A
M
Q
S
A
I
E
K
L
K
DPS
S
A
A
V
V
G
GQQAGLLTGP
L
Y
T
I
H
K
I
I
S
I
I
V
L
A
K
Q
Q
E
K
E
L
Q
V
P
V
I
P
I
F
W
V
A
G
E
D
H
-
D
L
D
E
I
N
F
V
H
T
S
E
E
N
G
----------
P
V
K
K
K
L
P
Q
S
Y
WKKS-------
S
A
A
S
T
S
L
D
Q
E
K
C
A
A
W
I
D
D
V
---
F
A
A
F
---
E
E
T
D
H
T
N
T
L
L
D
N
V
K
R
C
L
R
E
SVT
F
T
D
F
F
E
L
L
I
A
D
L
FQEEG
L
V
L
L
N
SGDPGIKKLE
T
A
M
F
Q
K
I
L
R
E
N
D
E
L
A
R
A
V
S
D
Q
Q
A
F
M
R
Q
A
G
Y
K
P
I
IESGKEQAN
L
F
Y
E
Y
ED
E
R
F
L
I
E
K
D
NGRFVIKELD
L
G
W
T
R
D
E
L
H
T
H
M
E
E
HPER
F
S
N
N
VVT
R
P
L
M
Q
E
F
L
I
PTL
A
F
I
A
G
P
G
E
I
N
Y
W
G
E
L
K
Q
A
F
A
V
M
GFKM
P
P
V
M
P
R
L
N
I
T
I
L
E
R
H
I
E
K
K
L
A
E
R
NIS
L
Q
D
A
I
E
RGT
E
N
Q
R
E
T
Y
F
E
R
Q
IP
E
E
F
T
A
V
M
D
Q
A
K
S
Q
I
E
A
I
H
K
T
V
R
Q
E
A
L
K
V
DQSL
E
P
L
L
L
K
N
A
A
F
I
Q
D
Q
L
Q
F
L
E
R
T
V
M
K
R
I
E
E
K
E
G
Y
V
L
K
D
Y
E
R
I
Q
N
S
IKPLLAPQERIWNI
M
Y
Y
L
N
R
YG
P
K
F
F
T
T
F
K
N
LPFSFQN
Q
H
Q
V
V
K
L
37
Fugue
40.66
22%
-39
- C5 -
4HR1
-
?
A:
[3-120]
--------------------------------------------------------------------------------------------FN
G
A
Q
T
V
I
Q
K
I
S
W
L
R
T
A
I
A
F
L
K
G
Y
M
E
T
T
GAT
K
K
E
L
E
Q
V
E
K
L
K
E
R
V
D
E
I
A
T
A
V
N
W
D
V
Y
A
Q
Y
A
R
GDFNLLS
D
D
E
Y
K
E
I
Q
K
A
L
-----------
L
V
L
E
D
--
I
K
E
Q
I
I
V
E
M
L
R
V
GLA
Q
G
Q
M
---
G
T
L
K
I
S
D
Y
L
D
S
L
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
35.85
36%
-30
- C6 -
4GDL
-
ATG5_HUMAN
B:
[45-98]
---------------------------------------------------------------------------------------------------------------------------------
L
T
L
V
T
D
K
-
V
K
K
H
F
Q
K
V
M
R
Q
E
D
I
S
E
I
-------
W
F
E
Y
E
G
T
P
L
K
W
-----------
H
Y
P
--
I
G
L
L
F
D
L
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
35.70
36%
-30
- C6 -
4GDK
-
ATG5_HUMAN
B:
[45-97]
---------------------------------------------------------------------------------------------------------------------------------
L
T
L
V
T
D
K
-
V
K
K
H
F
Q
K
V
M
R
Q
E
D
I
S
E
I
-------
W
F
E
Y
E
G
T
P
L
K
W
-----------
H
Y
P
--
I
G
L
L
F
D
L
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
34.92
23%
-90
- C4 -
2XB3
1
?
A:
[6-36]
-------------------------------------------------------------------------------------------------------------------------------------------
S
G
L
Q
A
Y
V
D
S
Y
D
G
Y
E
F
------------
L
Y
P
R
G
W
-----------
V
Q
V
Q
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------