@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0435: (2015-12-15 )
MYKVADIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQLHCHNLPRVPIDILLGGPPCQSYSTLGKRKMDEKANLFKEYLRILDLVKPKIFVFENVVGLMSMQKGQLFQRICNAFKERGYILEHAILNALDYGVPQVRERVILVGALKSFKQKFYFPKPIKTHFSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVRNSKELSEHSSPKNNEKLIKIMQTLKDGQSKDDLPESLRPKSGYINTYAKMWWEKPAPTITRNFSTPSSSRCIHPRDSRALSIREGARLQSFPDNYKFYGSANAKRLQIGNAVPPLLSAALAHAVFDFLRGKNV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_A_2(3SWR)
DNMT1_HUMAN
[Raw transfer]




SAH_A_2(3PT9)
DNMT1_MOUSE
[Raw transfer]




EDO_A_24(3SWR)
DNMT1_HUMAN
[Raw transfer]




21 HHSearch 91.6428% -72 * C4 *3SWR 7.4 DNMT1_HUMAN
50 Fugue 90.9527% -70 - C4 -3AV4 - DNMT1_MOUSE -
49 Fugue 90.4327% -75 - C4 -3PT9 7.6 DNMT1_MOUSE
23 HHSearch 83.9532% -68 - C4 -3UBT - MTH3_HAEAE -
3 PsiBlast_PDB 83.7227% -74 - C4 -4FT4 - CMT1_MAIZE -
1 PsiBlast_PDB 82.7829% -75 - C4 -3UBT - MTH3_HAEAE -
25 HHSearch 82.7426% -60 - C4 -3G7U - ? -
22 HHSearch 82.2228% -72 - C4 -2C7P - MTH1_HAEPH -
2 PsiBlast_PDB 81.7427% -61 - C4 -3G7U - ? -
6 PsiBlast_PDB 80.4528% -60 - C4 -4MHT - MTH1_HAEPH -
4 PsiBlast_PDB 79.7728% -59 - C4 -1MHT - MTH1_HAEPH -
15 PsiBlast_PDB 79.5328% -60 - C4 -1SKM - MTH1_HAEPH -
9 PsiBlast_PDB 79.5228% -61 - C4 -7MHT - MTH1_HAEPH -
12 PsiBlast_PDB 79.3828% -60 - C4 -10MH - MTH1_HAEPH -
10 PsiBlast_PDB 79.3628% -64 - C4 -8MHT - MTH1_HAEPH -
8 PsiBlast_PDB 79.2828% -61 - C4 -6MHT - MTH1_HAEPH -
16 PsiBlast_PDB 79.2328% -55 - C4 -2C7O - MTH1_HAEPH -
19 PsiBlast_PDB 78.9328% -57 - C4 -2HR1 - MTH1_HAEPH -
17 PsiBlast_PDB 78.7028% -57 - C4 -2C7P - MTH1_HAEPH -
7 PsiBlast_PDB 78.6428% -61 - C4 -5MHT - MTH1_HAEPH -