@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1369: (2016-03-24 )
MTKSRFFSDVAETSSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIPTATLMHHVLKKENGLRTDQLLSQIAIFDIPTYHKPLLITDCAMNVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAKMPSTLEAQEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAGAKVGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_A_4(3U9E)
?
[Raw transfer]



COD_A_3(3UF6)
?
[Raw transfer]



COD_A_3(3UF6)
?
[Raw transfer]



PEG_A_8(3TNG)
?
[Raw transfer]



PEG_A_8(3TNG)
?
[Raw transfer]
16 HHSearch 99.78100%-126 - C1 -3UF6 5.5 ?
3 PsiBlast_PDB 99.3798%-126 - C1 -3UF6 5.5 ?
1 PsiBlast_PDB 98.6898%-124 - C1 -3TNG 2.3 ?
2 PsiBlast_PDB 98.5598%-125 - C1 -3U9E 5.3 ?
29 Fugue 96.9999%-121 - C1 -3TNG 2.3 ?
15 HHSearch 77.4542%-104 - C1 -1YCO - ? -
4 PsiBlast_PDB 76.4842%-104 - C1 -1YCO - ? -
18 HHSearch 67.6722% -91 - C1 -2AF4 - PTAS_METTE -
20 HHSearch 64.9920% -91 - C1 -1TD9 - PTAS_BACSU -
19 HHSearch 63.7623% -87 - C1 -1VMI - EUTD_ECOLI -
6 PsiBlast_PDB 54.2526% -65 - C1 -1VMI - EUTD_ECOLI -
7 PsiBlast_PDB 50.4223% -76 - C1 -1TD9 - PTAS_BACSU -
8 PsiBlast_PDB 49.5123% -73 - C1 -1XCO - PTAS_BACSU -
25 HHSearch 49.3614% -83 - C1 -1YXO - PDXA1_PSEAE -
37 Fugue 48.7825% -37 - C1 -4FYP - VSP1_ARATH -
26 HHSearch 47.9216% -80 - C1 -3TSN - PDXA_CAMJE -
12 PsiBlast_PDB 47.2726% -64 - C1 -4E4R - PTAS_STAAR -
23 HHSearch 47.1713% -76 - C1 -3LXY - PDXA_YERPE -
32 Fugue 44.3220% -64 - C2 -4ZOX - SQT1_YEAST -
17 HHSearch 43.7923% 15 * C1 *1R5J - ? -