@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1832: (2016-03-29 )
MNKPIIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGKRPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]



BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]



BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]



BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]



BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]



U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]



C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]



U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]



C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]



U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]



U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]



U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]



C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]



U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]



GOL_A_3(3VE9)
?
[Raw transfer]



EDO_A_4(1VQT)
PYRF_THEMA
[Raw transfer]



DTT_C_3(2CZD)
PYRF_PYRHO
[Raw transfer]



XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]



PEG_A_5(3UWQ)
PYRF_VIBCH
[Raw transfer]



EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]



PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]
34 HHSearch 96.0861% -83 - C3 -2YYU 4.1 PYRF_GEOKA
2 PsiBlast_PDB 96.0061% -87 - C3 -2YYU 4.1 PYRF_GEOKA
23 PsiBlast_CBE 95.2763% -85 - C3 -1DBT 7.1 PYRF_BACSU
52 Fugue 95.1863% -82 - C3 -1DBT 6.9 PYRF_BACSU
33 HHSearch 94.9463% -82 - C3 -1DBT 6.9 PYRF_BACSU
3 PsiBlast_PDB 94.9363% -83 - C3 -1DBT - PYRF_BACSU -
21 PsiBlast_CBE 94.8561% -85 - C3 -2YYU 3.5 PYRF_GEOKA
22 PsiBlast_CBE 94.7063% -84 - C3 -1DBT 7.4 PYRF_BACSU
53 Fugue 93.1662% -81 - C3 -1DBT 6.9 PYRF_BACSU
1 PsiBlast_PDB 92.5661% -89 - C3 -2YYT - PYRF_GEOKA -
25 PsiBlast_CBE 84.7944% -82 - C3 -3LDV - PYRF_VIBCH -
5 PsiBlast_PDB 83.9344% -80 - C3 -3LDV - PYRF_VIBCH -
26 PsiBlast_CBE 83.7943% -86 - C3 -1EIX 6.0 PYRF_ECOLI
6 PsiBlast_PDB 83.3044% -83 - C3 -3UWQ 6.0 PYRF_VIBCH
28 PsiBlast_CBE 83.2743% -81 - C3 -1EIX 6.3 PYRF_ECOLI
24 PsiBlast_CBE 83.0144% -79 - C3 -3UWQ 2.6 PYRF_VIBCH
32 HHSearch 82.8640% -71 - C3 -1EIX 6.4 PYRF_ECOLI
8 PsiBlast_PDB 82.4743% -90 - C3 -1L2U - PYRF_ECOLI -
7 PsiBlast_PDB 82.3943% -82 - C3 -1EIX 6.4 PYRF_ECOLI
11 PsiBlast_PDB 81.9342% -75 - C3 -1JJK - PYRF_ECOLI -
27 PsiBlast_CBE 81.5343% -84 - C3 -1EIX 6.3 PYRF_ECOLI