@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0041: (2015-11-27 )
MSKSDILCKRVIGIVGSGQLGKMTAIAATKLGQETHIFANAKDDPACSVANNLTIADFSDKKALESFAQSVSLVTIESENIPCDAIDIMSQYVDFYPGKRALHISQNRLREKDFIRNLGIRTADYKSIQDHNDLLEVTRAFGYPTRLKTTEMGYDGKGQYMIGNDSQVERFASFDWNAQYILEASVDLLKEVSIVVTRDKNGKVAFFPVAENHHVDGILDTSIVPAKVDSKLVQEIQQTAEKIADALDVVGILAIEFFITKNSELLVNELAPRPHNSCHWSLDACNVSQFEQLIRVICKLPMQEVVLRFPCMTKNIIGNDVYNTYKYLSDKRANLTIYGKKEVRGRRKMGHVNIDLS

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_12(4DLK)
?
[Raw transfer]




ATP_A_3(3ETH)
PURK_ECOLI
[Raw transfer]




ANP_A_2(4MA5)
?
[Raw transfer]




ATP_A_3(3ETH)
PURK_ECOLI
[Raw transfer]




ATP_B_6(3V4S)
?
[Raw transfer]




ADP_A_3(3V4S)
?
[Raw transfer]




ADP_A_3(3ETJ)
PURK_ECOLI
[Raw transfer]




ADP_B_4(3QFF)
?
[Raw transfer]




A12_A_3(4MAM)
?
[Raw transfer]




ADP_A_3(3QFF)
?
[Raw transfer]




ADP_A_4(3ORQ)
?
[Raw transfer]




ADP_A_3(3R5H)
?
[Raw transfer]




ADP_B_6(3R5H)
?
[Raw transfer]




ADP_A_4(3ORQ)
?
[Raw transfer]




AMP_A_2(4MA0)
?
[Raw transfer]




AMP_A_3(3AW8)
?
[Raw transfer]




AMP_B_5(3AW8)
?
[Raw transfer]




AMP_A_3(3AW8)
?
[Raw transfer]




FMT_A_15(4M9U)
?
[Raw transfer]




ATP_A_7(4DLK)
?
[Raw transfer]




ATP_A_8(4DLK)
?
[Raw transfer]




31 HHSearch 95.7041% -87 - C1 -3Q2O - ? -
6 PsiBlast_PDB 90.6035% -84 - C1 -4E4T - ? -
34 HHSearch 90.3035% -92 - C1 -3AX6 - ? -
23 PsiBlast_CBE 90.3040% -86 - C1 -3QFF 4.5 ?
1 PsiBlast_PDB 89.9340% -85 - C1 -3Q2O - ? -
25 PsiBlast_CBE 89.9140% -86 - C1 -4DLK 7.2 ?
5 PsiBlast_PDB 89.8540% -83 - C1 -4DLK 4.2 ?
2 PsiBlast_PDB 89.6340% -85 - C1 -3QFF 6.0 ?
21 PsiBlast_CBE 89.6140% -85 - C1 -3V4S 7.2 ?
24 PsiBlast_CBE 89.4840% -85 - C1 -3Q2O - ? -
3 PsiBlast_PDB 88.9840% -82 - C1 -3R5H 5.3 ?
26 PsiBlast_CBE 88.8435% -89 - C1 -4E4T - ? -
32 HHSearch 88.5138% -90 - C1 -3AW8 4.3 ?
4 PsiBlast_PDB 88.4840% -81 - C1 -3V4S 5.9 ?
22 PsiBlast_CBE 87.5740% -84 - C1 -3R5H 5.1 ?
14 PsiBlast_PDB 85.3536% -85 - C1 -4M9U 3.1 ?
13 PsiBlast_PDB 85.2836% -86 - C1 -4MAM 7.3 ?
15 PsiBlast_PDB 85.1132% -98 - C1 -3AX6 - ? -
12 PsiBlast_PDB 84.6436% -85 - C1 -4MA5 4.7 ?
11 PsiBlast_PDB 84.3036% -85 - C1 -4MA0 5.4 ?
27 PsiBlast_CBE 82.9436% -83 - C1 -3AW8 5.0 ?
7 PsiBlast_PDB 82.6736% -85 - C1 -3AW8 4.3 ?
30 HHSearch 82.4634% -76 * C1 *3ORQ 5.3 ?
8 PsiBlast_PDB 78.7333% -77 - C1 -3ORQ 5.3 ?
38 HHSearch 77.0831% -77 - C1 -3ETH 8.1 PURK_ECOLI
18 PsiBlast_PDB 76.5930% -80 - C1 -3ETJ 6.6 PURK_ECOLI
17 PsiBlast_PDB 76.5430% -84 - C1 -3ETH 8.1 PURK_ECOLI