@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0119: (2016-03-12 )
MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_2(3C5Q)
DCDA_HELPX
[Raw transfer]



PLP_A_5(2J66)
BTRK_BACCI
[Raw transfer]



PLP_A_5(2J66)
BTRK_BACCI
[Raw transfer]



LYS_A_3(3C5Q)
DCDA_HELPX
[Raw transfer]
33 HHSearch 93.0830% -91 - C1 -2J66 3.6 BTRK_BACCI
1 PsiBlast_PDB 91.5232% -91 - C1 -2J66 3.6 BTRK_BACCI
41 HHSearch 87.2725% -91 - C1 -3VAB - ? -
39 HHSearch 86.8224% -98 - C1 -2P3E - DCDA_AQUAE -
29 HHSearch 85.9922% -87 - C1 -2O0T - DCDA_MYCTU -
13 PsiBlast_PDB 85.8822% -81 - C1 -2O0T - DCDA_MYCTU -
4 PsiBlast_PDB 84.9926% -85 - C1 -2QGH - DCDA_HELPX -
12 PsiBlast_PDB 84.4622% -79 - C1 -1HKV - DCDA_MYCTU -
5 PsiBlast_PDB 84.2426% -83 - C1 -3C5Q 4.9 DCDA_HELPX
42 HHSearch 84.0926% -93 - C1 -3N2B - DCDA_VIBCH -
3 PsiBlast_PDB 83.8026% -84 - C1 -3VAB - ? -
10 PsiBlast_PDB 83.6424%-106 - C1 -2PLJ - ? -
11 PsiBlast_PDB 83.2524%-105 - C1 -2PLK - ? -
31 HHSearch 81.9822% -82 * C1 *1TWI - DCDA_METJA -
30 HHSearch 81.8622% -91 - C1 -2YXX - DCDA_THEMA -
14 PsiBlast_PDB 81.5523% -75 - C1 -1HKW - DCDA_MYCTU -
6 PsiBlast_PDB 80.6325%-102 - C1 -2P3E - DCDA_AQUAE -
54 Fugue 80.6121% -89 - C1 -7ODC - DCOR_MOUSE -
2 PsiBlast_PDB 80.5228% -84 - C1 -3N2B - DCDA_VIBCH -
37 HHSearch 80.0221% -86 - C1 -1KNW - DCDA_ECOLI -