@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0304: (2015-12-14 )
MNNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSIAKTLVHRLKAFNFEKICKAWKNESL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]



5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]



5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]



ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]



5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]



POP_A_3(2QOR)
?
[Raw transfer]



FMT_A_3(1S4Q)
KGUA_MYCTU
[Raw transfer]



FMT_B_2(1Z8F)
KGUA_MYCTU
[Raw transfer]
90 HHSearch 90.8842% -88 - C4 -1S96 - KGUA_ECOLI -
87 HHSearch 89.9638% -95 - C4 -1ZNW - KGUA_MYCTU -
5 PsiBlast_PDB 89.9039% -90 - C4 -1ZNZ - KGUA_MYCTU -
6 PsiBlast_PDB 89.5539% -96 - C4 -1Z8F 3.4 KGUA_MYCTU
3 PsiBlast_PDB 89.4139% -95 - C4 -1ZNX - KGUA_MYCTU -
2 PsiBlast_PDB 89.2839% -95 - C4 -1ZNW - KGUA_MYCTU -
4 PsiBlast_PDB 88.9939% -94 - C4 -1ZNY - KGUA_MYCTU -
1 PsiBlast_PDB 88.8639% -91 - C4 -1S4Q 3.5 KGUA_MYCTU
81 HHSearch 87.5643% -75 * C4 *1EX7 6.9 KGUA_YEAST
18 PsiBlast_PDB 87.1140% -99 - C4 -2J41 - KGUA_STAAC -
10 PsiBlast_PDB 86.5545% -79 - C4 -2F3R - KGUA_ECOLI -
23 PsiBlast_CBE 86.0245% -83 - C4 -2F3T - KGUA_ECOLI -
9 PsiBlast_PDB 85.9245% -78 - C4 -2ANC - KGUA_ECOLI -
21 PsiBlast_CBE 85.5845% -79 - C4 -2F3T - KGUA_ECOLI -
25 PsiBlast_CBE 85.5045% -74 - C4 -2AN9 - KGUA_ECOLI -
24 PsiBlast_CBE 85.4045% -79 - C4 -2F3R - KGUA_ECOLI -
7 PsiBlast_PDB 85.3945% -78 - C4 -2AN9 - KGUA_ECOLI -
11 PsiBlast_PDB 85.1345% -79 - C4 -2F3T - KGUA_ECOLI -
12 PsiBlast_PDB 84.8144% -80 - C4 -1S96 - KGUA_ECOLI -
86 HHSearch 84.6435% -78 - C4 -1Z6G - ? -
15 PsiBlast_PDB 83.6545% -65 - C4 -1GKY 7.0 KGUA_YEAST
14 PsiBlast_PDB 83.2445% -66 - C4 -1EX7 6.9 KGUA_YEAST
84 HHSearch 81.8237% -75 - C4 -1LVG 8.5 KGUA_MOUSE
78 HHSearch 79.5434% -72 - C4 -2QOR 2.7 ?
20 PsiBlast_PDB 77.6641% -55 - C4 -1LVG 8.5 KGUA_MOUSE