@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1169: (2016-03-22 )
VKITTASHGGNYNELAKQHGLTKEMVLDFSANINPLGVPASLKQTITANLDKLVEYPEPDYLALRARIASFHQLDLANVIPGNGATELIFGIAKVTKAQKVLLLAPTFAEYERAFFDAEIVYAELTKETNFAAVEIVLEILERDTEIEAVCLCNPNNPTGQLIAQQEMIKIADLCEKRNIYLIIDEAFMDFLEENETISMINNLERFPHVAIIRAFTKFFAIPGLRLGYLLTKNDLLAEALMQMREPWSINTFADLAGQMLLEDEAYIRQTFDWINEERDFLYRGLSRFSALTVYRPTVNYIFFHLEKPLDLRKELLLKGIFIRSCANYRGLTENYYRVAVKSRADNSQLLTALEVIFSGN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

33P_C_3(1LC8)
COBD_SALTY
[Raw transfer]




PLP_C_3(1GEX)
HIS8_ECOLI
[Raw transfer]




PMP_A_2(1FG7)
HIS8_ECOLI
[Raw transfer]




PMP_A_3(1UU2)
HIS8_THEMA
[Raw transfer]




PLP_A_5(1LKC)
COBD_SALTY
[Raw transfer]




PPE_C_3(1GEY)
HIS8_ECOLI
[Raw transfer]




TPO_E_5(1LC7)
COBD_SALTY
[Raw transfer]




HSA_E_5(1GEX)
HIS8_ECOLI
[Raw transfer]




4 PsiBlast_PDB 97.1442%-123 - C1 -1LC8 10.2 COBD_SALTY
24 HHSearch 96.6442%-123 - C1 -1LC5 - COBD_SALTY -
2 PsiBlast_PDB 96.6242%-122 - C1 -1LC5 - COBD_SALTY -
1 PsiBlast_PDB 96.3742%-123 - C1 -1LKC 4.4 COBD_SALTY
3 PsiBlast_PDB 95.7442%-118 - C1 -1LC7 5.2 COBD_SALTY
28 HHSearch 81.9434%-137 - C1 -3FTB - ? -
5 PsiBlast_PDB 77.6632%-120 - C1 -3FTB - ? -
21 PsiBlast_CBE 76.3532%-117 - C1 -3FTB - ? -
23 PsiBlast_CBE 75.8432%-116 - C1 -3FTB - ? -
22 PsiBlast_CBE 75.5532%-116 - C1 -3FTB - ? -
46 Fugue 71.4124%-120 - C1 -1IJI - HIS8_ECOLI -
30 HHSearch 70.7825%-132 - C1 -1FG7 - HIS8_ECOLI -
27 HHSearch 69.2226%-124 - C1 -3EUC - HIS82_CUPPJ -
26 HHSearch 68.2622%-121 - C1 -3GET - HIS8_CAMJE -
29 HHSearch 67.4219%-117 - C1 -3LY1 - ? -
45 Fugue 66.8623%-117 - C1 -1FG7 - HIS8_ECOLI -
13 PsiBlast_PDB 66.8527%-119 - C1 -1FG3 - HIS8_ECOLI -
14 PsiBlast_PDB 66.7427%-118 - C1 -1FG7 3.6 HIS8_ECOLI
7 PsiBlast_PDB 65.8326%-112 - C1 -3EUC - HIS82_CUPPJ -
9 PsiBlast_PDB 65.1527%-111 - C1 -1GEW - HIS8_ECOLI -