@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1354: (2016-03-23 )
MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGVALILPEKAYFVTDFRYTEQAAKQAEGYEIVQHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSEFKQMERVFNRQLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRAGATSSSFDTIVASGIRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFGYGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLLITETGNEILIHSPKELIIL

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRD_A_8(2BHB)
AMPP_ECOLI
[Raw transfer]



P6G_A_6(3CTZ)
XPP1_HUMAN
[Raw transfer]



PG4_A_3(1WLR)
AMPP_ECOLI
[Raw transfer]



IPA_A_7(1WL6)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(1N51)
AMPP_ECOLI
[Raw transfer]
-
LEU_A_3(2BH3)
AMPP_ECOLI
[Raw transfer]



LEU_A_3(1A16)
AMPP_ECOLI
[Raw transfer]



LEU_A_3(2BN7)
AMPP_ECOLI
[Raw transfer]



CHAIN_B_2(2BHD)
AMPP_ECOLI
[Raw transfer]
-
CHAIN_B_2(2BHA)
AMPP_ECOLI
[Raw transfer]
-
23 PsiBlast_CBE 91.0759% -92 - C2 -3Q6D - ? -
48 HHSearch 90.8559% -92 - C2 -3Q6D - ? -
21 PsiBlast_CBE 90.8559% -92 - C2 -3Q6D - ? -
1 PsiBlast_PDB 90.7959% -92 - C2 -3Q6D - ? -
22 PsiBlast_CBE 89.5959% -88 - C2 -3Q6D - ? -
50 HHSearch 79.5143% -92 - C2 -1WY2 - PEPQ_PYRHO -
49 HHSearch 78.7440% -92 - C2 -2ZSG - ? -
2 PsiBlast_PDB 77.5841% -89 - C2 -2ZSG - ? -
25 PsiBlast_CBE 76.1843% -83 - C2 -1WY2 - PEPQ_PYRHO -
4 PsiBlast_PDB 76.1443% -83 - C2 -1WY2 - PEPQ_PYRHO -
24 PsiBlast_CBE 75.8841% -89 - C2 -2ZSG - ? -
3 PsiBlast_PDB 74.0641% -84 - C2 -1PV9 - PEPQ_PYRFU -
41 Fugue 73.5640% -86 - C2 -1PV9 - PEPQ_PYRFU -
51 HHSearch 67.8332% -82 - C2 -1WN1 - ? -
6 PsiBlast_PDB 66.7135% -80 - C2 -4FKC - ? -
40 Fugue 66.2031% -77 - C2 -1WN1 - ? -
26 PsiBlast_CBE 64.1735% -81 - C2 -4RGZ - ? -
5 PsiBlast_PDB 61.6435% -77 - C2 -4RGZ - ? -
55 HHSearch 61.2625% -77 - C2 -3IG4 - ? -
53 HHSearch 55.8221% -72 - C2 -1CHM - CREA_PSEPU -
14 PsiBlast_PDB 49.3731% -75 - C2 -1N51 6.7 AMPP_ECOLI
20 PsiBlast_PDB 48.8131% -77 - C2 -2BHD 3.2 AMPP_ECOLI
29 PsiBlast_CBE 48.7331% -77 - C2 -2BN7 2.6 AMPP_ECOLI
17 PsiBlast_PDB 48.6331% -77 - C2 -2BHA 4.9 AMPP_ECOLI
30 PsiBlast_CBE 48.4531% -76 - C2 -2BH3 2.6 AMPP_ECOLI
18 PsiBlast_PDB 48.2631% -75 - C2 -2BHB 3.4 AMPP_ECOLI
15 PsiBlast_PDB 48.2331% -73 - C2 -1WL6 2.7 AMPP_ECOLI
16 PsiBlast_PDB 48.1831% -75 - C2 -1WLR 2.9 AMPP_ECOLI
36 PsiBlast_CBE 47.4631% -74 - C2 -1A16 4.0 AMPP_ECOLI
38 PsiBlast_CBE 34.8631% -60 - C2 -3CTZ 3.1 XPP1_HUMAN