@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1524: (2016-03-25 )
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_5(4M0K)
?
[Raw transfer]



AMP_C_9(4M0K)
?
[Raw transfer]



AMP_B_7(4M0K)
?
[Raw transfer]



AMP_D_11(4M0K)
?
[Raw transfer]



AMP_A_4(1ZN8)
APT_HUMAN
[Raw transfer]



AMP_B_5(1ZN8)
APT_HUMAN
[Raw transfer]



AMP_A_3(1ORE)
APT_HUMAN
[Raw transfer]



AMP_A_4(1ZN8)
APT_HUMAN
[Raw transfer]



AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]



PRP_A_4(1L1R)
?
[Raw transfer]



PRP_B_10(1ZN7)
APT_HUMAN
[Raw transfer]



9DA_I_9(1L1Q)
?
[Raw transfer]



9DA_I_9(1L1Q)
?
[Raw transfer]



9DA_A_3(1L1R)
?
[Raw transfer]



ADE_B_12(1ZN7)
APT_HUMAN
[Raw transfer]



ADE_A_8(1ZN7)
APT_HUMAN
[Raw transfer]



CIT_A_4(1QB7)
?
[Raw transfer]
1 PsiBlast_PDB 97.1453%-143 - C5 -4LZA - APT_THEP3 -
63 HHSearch 97.0054%-136 - C5 -2DY0 - APT_ECOLI -
4 PsiBlast_PDB 92.6851%-127 - C5 -4M0K 5.7 ?
3 PsiBlast_PDB 92.0752%-131 - C5 -4MB6 - APT_YERPS -
2 PsiBlast_PDB 91.6155%-125 - C5 -2DY0 - APT_ECOLI -
21 PsiBlast_CBE 90.8351%-131 - C5 -4M0K 5.7 ?
22 PsiBlast_CBE 89.5651%-124 - C5 -4M0K 5.3 ?
23 PsiBlast_CBE 89.4851%-128 - C5 -4M0K 5.8 ?
65 HHSearch 88.7039%-132 * C5 *1ZN8 7.3 APT_HUMAN
8 PsiBlast_PDB 82.6640%-121 - C5 -1ZN9 - APT_HUMAN -
26 PsiBlast_CBE 82.3640%-126 - C5 -1ZN7 4.5 APT_HUMAN
24 PsiBlast_CBE 81.9640%-127 - C5 -1ZN9 6.7 APT_HUMAN
6 PsiBlast_PDB 81.3340%-126 - C5 -1ZN7 3.3 APT_HUMAN
5 PsiBlast_PDB 81.2740%-121 - C5 -1ORE 6.8 APT_HUMAN
25 PsiBlast_CBE 81.1840%-122 - C5 -1ZN8 6.8 APT_HUMAN
10 PsiBlast_PDB 80.6940%-127 - C5 -1G2P - APT1_YEAST -
7 PsiBlast_PDB 80.6840%-122 - C5 -1ZN8 7.3 APT_HUMAN
66 HHSearch 80.4837%-132 - C5 -1G2Q - APT1_YEAST -
54 Fugue 78.8737%-124 - C5 -1G2Q - APT1_YEAST -
9 PsiBlast_PDB 76.1140%-120 - C5 -1G2Q - APT1_YEAST -
64 HHSearch 75.6232%-114 - C5 -1L1Q 3.3 ?
11 PsiBlast_PDB 73.3936%-116 - C5 -1L1Q 3.3 ?
12 PsiBlast_PDB 71.6236%-121 - C5 -1L1R 4.6 ?