@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1583: (2016-03-26 )
MTQVTFKHNPVTLVGTERKVGDKAPNFTVVNRDLEEVTLHDYDGKVRLISVVPSIDTSVCSTQTRKFNEEASNLDNTVVLTISVDLPFAQKKWCAAEGLPNAITLSDHRDLSFGEAYGVIMKELRLLARSVFVVNAVGEIVYTEVVPEGSDHPNYEAAIEAAKKA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_B_4(3HVS)
TPX_ECOLI
[Raw transfer]




CIT_A_3(3I43)
TPX_ECOLI
[Raw transfer]




CIT_A_3(3HVS)
TPX_ECOLI
[Raw transfer]




CIT_B_4(3I43)
TPX_ECOLI
[Raw transfer]




PG4_B_13(3P7X)
?
[Raw transfer]




PG4_B_11(3P7X)
?
[Raw transfer]




PG4_C_20(3P7X)
?
[Raw transfer]




PG4_D_22(3P7X)
?
[Raw transfer]




23 PsiBlast_CBE 93.4662% -93 - C2 -3P7X 1.7 ?
3 PsiBlast_PDB 93.2862% -92 - C2 -3P7X - ? -
1 PsiBlast_PDB 93.1863%-102 - C2 -2JSY - TPX_BACSU -
43 HHSearch 93.1761% -92 - C2 -3P7X - ? -
21 PsiBlast_CBE 92.8062% -92 - C2 -3P7X 1.9 ?
44 HHSearch 92.5761% -96 - C2 -2JSY - TPX_BACSU -
22 PsiBlast_CBE 92.0862% -89 - C2 -3P7X 2.1 ?
2 PsiBlast_PDB 91.8763% -90 - C2 -2JSZ - TPX_BACSU -
6 PsiBlast_PDB 86.4448% -87 - C2 -2XPE - ? -
5 PsiBlast_PDB 85.6948% -82 - C2 -2XPD - ? -
16 PsiBlast_PDB 85.3145% -90 - C2 -4AF2 - TPX_ECOLI -
12 PsiBlast_PDB 85.3146% -93 - C2 -3I43 2.6 TPX_ECOLI
11 PsiBlast_PDB 85.1646% -93 - C2 -3HVS 3.7 TPX_ECOLI
24 PsiBlast_CBE 84.8646% -94 - C2 -3I43 3.1 TPX_ECOLI
25 PsiBlast_CBE 84.6646% -92 - C2 -3HVS 2.6 TPX_ECOLI
13 PsiBlast_PDB 84.2844% -92 - C2 -4JE1 - ? -
27 PsiBlast_CBE 84.0945% -92 - C2 -3HVX - TPX_ECOLI -
29 PsiBlast_CBE 83.7045%-100 - C2 -3HVX - TPX_ECOLI -
7 PsiBlast_PDB 83.5248% -86 - C2 -3ZRD - ? -
15 PsiBlast_PDB 82.5645% -90 - C2 -3HVV - TPX_ECOLI -