@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1952: (2016-03-30 )
VTFERLGTMNVNAEGHLEIGGVDTLKLADKYGTPLYVYDVALIRDRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELFTAIKANFPPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKASVLIRVTPGIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFETTGFKLAARRIMDKLVEWHQTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEVRDVAESNDIDIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRPALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSNAGEVLAVFCTGAYGYAMASNYNRIPRPPVVFVENGVDKLIVARETYENLVQNDLSL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P3D_A_3(2PLK)
?
[Raw transfer]




P3T_A_4(2PLJ)
?
[Raw transfer]




PLP_A_2(2YXX)
DCDA_THEMA
[Raw transfer]




PLP_A_2(2YXX)
DCDA_THEMA
[Raw transfer]




PLP_A_2(3C5Q)
DCDA_HELPX
[Raw transfer]




PLP_A_2(2QGH)
DCDA_HELPX
[Raw transfer]




PLP_A_2(2QGH)
DCDA_HELPX
[Raw transfer]




PLP_B_6(1HKV)
DCDA_MYCTU
[Raw transfer]




LYS_A_3(3C5Q)
DCDA_HELPX
[Raw transfer]




LYS_B_4(1HKV)
DCDA_MYCTU
[Raw transfer]




PLP_A_2(1KO0)
DCDA_ECOLI
[Raw transfer]




PLP_A_5(1KNW)
DCDA_ECOLI
[Raw transfer]




PLP_A_5(1KNW)
DCDA_ECOLI
[Raw transfer]




AZ1_C_3(1TUF)
DCDA_METJA
[Raw transfer]




MES_A_6(1KNW)
DCDA_ECOLI
[Raw transfer]




XAP_A_7(2OO0)
DCOR_HUMAN
[Raw transfer]




33 HHSearch 96.4641% -97 - C2 -2O0T - DCDA_MYCTU -
21 PsiBlast_CBE 95.2940% -99 - C2 -1HKV 3.6 DCDA_MYCTU
2 PsiBlast_PDB 95.2640% -99 - C2 -2O0T - DCDA_MYCTU -
22 PsiBlast_CBE 94.8240%-101 - C2 -2O0T - DCDA_MYCTU -
24 PsiBlast_CBE 94.5438%-102 - C2 -1TWI - DCDA_METJA -
34 HHSearch 94.4038%-105 - C2 -1TWI - DCDA_METJA -
6 PsiBlast_PDB 94.4038%-104 - C2 -1TUF 2.8 DCDA_METJA
23 PsiBlast_CBE 94.3138%-101 - C2 -1TWI - DCDA_METJA -
25 PsiBlast_CBE 94.2138%-103 - C2 -1TWI - DCDA_METJA -
4 PsiBlast_PDB 94.1838%-102 - C2 -1TWI - DCDA_METJA -
1 PsiBlast_PDB 93.3540% -99 - C2 -1HKV - DCDA_MYCTU -
3 PsiBlast_PDB 92.8140% -95 - C2 -1HKW - DCDA_MYCTU -
8 PsiBlast_PDB 90.4434%-116 - C2 -2QGH 8.4 DCDA_HELPX
9 PsiBlast_PDB 89.3933%-111 - C2 -3C5Q 5.0 DCDA_HELPX
38 HHSearch 88.5937%-103 - C2 -2P3E - DCDA_AQUAE -
5 PsiBlast_PDB 88.5237%-105 - C2 -2P3E - DCDA_AQUAE -
10 PsiBlast_PDB 87.3132%-105 - C2 -2YXX 3.3 DCDA_THEMA
27 PsiBlast_CBE 87.1633%-108 - C2 -3N2B - DCDA_VIBCH -
37 HHSearch 87.1033%-106 - C2 -3N2B - DCDA_VIBCH -
7 PsiBlast_PDB 86.7333%-106 - C2 -3N2B - DCDA_VIBCH -
40 HHSearch 86.2032%-101 * C2 *2QGH 8.3 DCDA_HELPX
35 HHSearch 86.1433%-101 - C2 -2YXX 3.3 DCDA_THEMA
39 HHSearch 80.4430% -98 - C2 -1KNW 4.8 DCDA_ECOLI
13 PsiBlast_PDB 78.5131% -84 - C2 -1KO0 2.8 DCDA_ECOLI
12 PsiBlast_PDB 78.4731% -82 - C2 -1KNW 4.9 DCDA_ECOLI