@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1961: (2016-03-30 )
LPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAEPAVGGKVRYFFPEKIIRDIGGIPAITGENLVANLKQQAETFHPTIVCSERVVDVTKLADGTFQLTSHNGSIHFSKTIVIATGSGTFEVNKLEALHAEDFPFAIHYDVKNIEQFRDKVVVVSGGGNSAIDWAQTLEPIAKKVHLIYRGEDFKAHEESVRELKNSRVEIHIHHEISELIGTNNQLTEITVCCNQTQTTKTIETEALFINHGVKVDLGTMAEWGFKQADFGIVVDDEMKTTVPGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_4(3AB1)
FENR_CHLTE
[Raw transfer]




FAD_A_3(3AB1)
FENR_CHLTE
[Raw transfer]




FAD_A_3(3AB1)
FENR_CHLTE
[Raw transfer]




62 HHSearch 97.2841%-102 - C3 -3LZW - FENR2_BACSU -
1 PsiBlast_PDB 95.7940%-102 - C3 -3LZW - FENR2_BACSU -
21 PsiBlast_CBE 95.6540%-102 - C3 -3LZX - FENR2_BACSU -
2 PsiBlast_PDB 95.4240%-100 - C3 -3LZX - FENR2_BACSU -
22 PsiBlast_CBE 92.9636% -97 - C3 -3AB1 12.4 FENR_CHLTE
3 PsiBlast_PDB 92.7136% -99 - C3 -3AB1 9.9 FENR_CHLTE
64 HHSearch 90.6236% -96 - C3 -3AB1 9.9 FENR_CHLTE
4 PsiBlast_PDB 88.6335%-104 - C3 -2ZBW - FENR_THET8 -
63 HHSearch 87.5433% -87 - C3 -2ZBW - FENR_THET8 -
82 Fugue 83.2623% -90 - C3 -1HYU - AHPF_SALTY -
67 HHSearch 82.7125%-103 - C3 -1FL2 - AHPF_ECOLI -
76 HHSearch 82.0424%-100 - C3 -1HYU - AHPF_SALTY -
20 PsiBlast_PDB 81.5326% -97 - C3 -4YKF - ? -
19 PsiBlast_PDB 80.4926% -98 - C3 -1HYU - AHPF_SALTY -
73 HHSearch 80.4026% -93 - C3 -2Q7V - ? -
66 HHSearch 79.6125%-108 * C3 *3R9U - ? -
71 HHSearch 78.9125% -89 - C3 -1VDC - TRXB1_ARATH -
8 PsiBlast_PDB 78.7328% -78 - C3 -4CCQ - ? -
7 PsiBlast_PDB 78.0328% -80 - C3 -4CBQ - ? -
70 HHSearch 77.9925% -94 - C3 -3ITJ - TRXB1_YEAST -