@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2764: (2016-04-07 )
MKIAAFDIGGTALKMGVVLPHGEIILTKSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETGLPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGGGIFSNGELVRGGRFRAGEFGYMFSERPGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQEENRHE

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BGC_A_4(3VGL)
?
[Raw transfer]




BGC_A_2(3VGM)
?
[Raw transfer]




GOL_A_6(1XC3)
SCRK_BACSU
[Raw transfer]




SUC_A_2(2GUP)
?
[Raw transfer]




SUC_A_2(2GUP)
?
[Raw transfer]




1 PsiBlast_PDB 100.0097%-127 - C1 -4HTL - BGLK_LISMO -
41 HHSearch 76.2135%-119 - C1 -2GUP 2.6 ?
2 PsiBlast_PDB 72.9734%-106 - C1 -2GUP 2.6 ?
45 HHSearch 69.1623%-113 - C1 -2AP1 - NAGK_SALTY -
39 HHSearch 67.6226%-104 - C1 -2QM1 - ? -
36 HHSearch 67.2629%-103 - C1 -3VGL - ? -
43 HHSearch 67.0426%-112 - C1 -1Z05 - ? -
38 HHSearch 66.7428%-109 - C1 -3VOV - ? -
64 Fugue 65.9224%-108 - C1 -1Z05 - ? -
25 PsiBlast_CBE 63.9131%-110 - C1 -3VGK - ? -
37 HHSearch 63.6321%-100 * C1 *2AA4 - NANK_ECOLI -
47 HHSearch 63.4322%-115 - C1 -2HOE - ? -
14 PsiBlast_PDB 63.3624% -98 - C1 -4DB3 - NAGK_VIBVU -
40 HHSearch 63.3318%-104 - C1 -1Z6R - MLC_ECOLI -
4 PsiBlast_PDB 62.6127% -91 - C1 -2QM1 - ? -
26 PsiBlast_CBE 62.4631%-109 - C1 -3VGK - ? -
23 PsiBlast_CBE 62.2831%-109 - C1 -3VGK - ? -
21 PsiBlast_CBE 62.1631%-106 - C1 -3VGK - ? -
11 PsiBlast_PDB 62.0331%-108 - C1 -3VGM 3.0 ?
9 PsiBlast_PDB 61.9631%-107 - C1 -3VGK - ? -
10 PsiBlast_PDB 61.3231%-101 - C1 -3VGL 2.8 ?