@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0113: (2015-11-28 )
MKFGKKLGFLALLMSIVLILGACGKTGLGNSTGNSTKNVTKKSAKNLKLGVSISTTNNPYFVAMKDGIDKYASNKKISIKVADAQDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVILMDRGSEGGKVLTTVASDNVAAGKMAADYAVKKLGKKAKAFELSGVPGASATVDRGKGFHSVAKSKLDILSSQSANFDRAKALNTTQNMIQGHKDVQIIFAQNDEMALGAAQAVKSAGLQNVLIVGIDGQPDAHDAIKKGDISATIAQQPAKMGEIAIQAAIDHYKGKKVEKETISPIYLVTKDNVEKYNW

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIP_A_3(2IOY)
?
[Raw transfer]




RIP_B_4(2IOY)
?
[Raw transfer]




RIP_A_3(2IOY)
?
[Raw transfer]




RIP_A_2(2FN8)
?
[Raw transfer]




RIP_B_2(1DRK)
RBSB_ECOLI
[Raw transfer]




RIP_B_2(2DRI)
RBSB_ECOLI
[Raw transfer]




RIP_B_2(2DRI)
RBSB_ECOLI
[Raw transfer]




RIP_B_2(1DBP)
RBSB_ECOLI
[Raw transfer]




RIP_A_2(2GX6)
RBSB_ECOLI
[Raw transfer]




RIP_B_2(1DRJ)
RBSB_ECOLI
[Raw transfer]




RIP_A_2(4ZJP)
?
[Raw transfer]




21 PsiBlast_CBE 89.1747% -68 - C2 -2IOY 5.9 ?
1 PsiBlast_PDB 88.7047% -68 - C2 -2IOY 5.5 ?
35 HHSearch 88.1946% -66 - C2 -2IOY 5.5 ?
3 PsiBlast_PDB 86.2045% -69 - C2 -1URP - RBSB_ECOLI -
2 PsiBlast_PDB 86.0746% -63 - C2 -2GX6 5.6 RBSB_ECOLI
34 HHSearch 85.7944% -59 - C2 -2DRI 5.9 RBSB_ECOLI
4 PsiBlast_PDB 85.0045% -59 - C2 -2DRI 5.9 RBSB_ECOLI
11 PsiBlast_PDB 84.8935% -69 - C2 -2FN9 - ? -
5 PsiBlast_PDB 84.7145% -60 - C2 -1DBP 5.7 RBSB_ECOLI
19 PsiBlast_PDB 84.6532% -66 - C2 -4RWE - ? -
45 HHSearch 84.6434% -58 - C2 -2VK2 - YTFQ_ECOLI -
6 PsiBlast_PDB 84.2544% -70 - C2 -1BA2 - RBSB_ECOLI -
8 PsiBlast_PDB 83.7444% -58 - C2 -1DRK 5.4 RBSB_ECOLI
10 PsiBlast_PDB 83.5735% -57 - C2 -2FN8 5.6 ?
7 PsiBlast_PDB 82.8644% -55 - C2 -1DRJ 5.4 RBSB_ECOLI
44 HHSearch 81.9536% -72 - C2 -2FN9 - ? -
39 HHSearch 81.3630% -81 - C2 -1GUD - ALSB_ECOLI -
43 HHSearch 81.3027% -57 - C2 -2H3H - ? -
12 PsiBlast_PDB 80.1735% -64 - C2 -2VK2 - YTFQ_ECOLI -
14 PsiBlast_PDB 78.7233% -55 - C2 -4RSM - ? -
9 PsiBlast_PDB 48.2341% 21 - C2 -4ZJP 3.2 ?