@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2132: (2015-12-13 )
MKLKIITVGKLKEKYLKEGVAEYQKRLNRFSKIETIELADEKTPDKASISENQRILDIEGERILSKIGERDYVIGLAIEGKQLPSESFSHLIDQKMISGYSTITFVIGGSLGLSQKVKKRADYLMSFGLLTLPHQLMKLVLMEQIYRAFMIRQGTPYHK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_2(4FAK)
RLMH_STAAU
[Raw transfer]




2 PsiBlast_PDB 92.5949%-119 - C1 -4FAK 8.0 RLMH_STAAU
3 PsiBlast_PDB 89.8449%-112 - C1 -1VH0 - RLMH_STAAU -
5 PsiBlast_PDB 75.5332%-114 - C1 -1O6D - RLMH_THEMA -
17 HHSearch 73.6530%-111 - C1 -1O6D - RLMH_THEMA -
1 PsiBlast_PDB 65.8356% -41 - C1 -1TO0 - RLMH_BACSU -
15 HHSearch 62.7557% 6 - C1 -1TO0 - RLMH_BACSU -
4 PsiBlast_PDB 57.8932% -22 - C1 -1NS5 - RLMH_ECOLI -
16 HHSearch 52.1833% -2 - C1 -1NS5 - RLMH_ECOLI -
23 HHSearch 48.6317%-156 - C1 -3QUV - ? -
20 HHSearch 47.8317%-154 - C1 -3KNU - TRMD_ANAPZ -
44 Fugue 47.4916% -52 - C1 -1UAL - TRMD_HAEIN -
25 HHSearch 45.9022%-154 - C1 -3IEF - TRMD_BARHE -
32 HHSearch 45.6017%-124 - C1 -3ILK - Y380_HAEIN -
21 HHSearch 43.8921%-140 - C1 -1OY5 - TRMD_AQUAE -
27 HHSearch 43.8514%-125 - C1 -3DCM - Y1570_THEMA -
22 HHSearch 43.5318%-151 - C1 -3KY7 - TRMD_STAAR -
41 Fugue 42.3116% -76 - C1 -1TIK - AZOR_ECOLI -
36 Fugue 42.2215% -69 - C1 -1T0I - LOT6_YEAST -
9 PsiBlast_PDB 41.6226% -71 - C1 -4KUH - ? -
6 PsiBlast_PDB 41.3226% -76 - C1 -4KUE - ? -