@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1504c: (2016-05-02 )
MSDHKVPFNRPYMTGRELAYIAEAHSCGHLAGDGPFTRRSHAWLEQQTGCRKALLTPSCTAALEMMALLLDIEEGDEVILPSYTFVSTANAFVLRGGVPVFVDIRPDTLNIDETRIVDAITPRTKAIVPVHYAGVACEMDAIMKIATHHNLAVVEDAAQGAMASYRGRALGSIGDLGALSFHETKNVISGEGGALLVNS

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

O1G_A_3(4K2M)
NTDA_BACSU
[Raw transfer]




O1G_B_9(4K2M)
NTDA_BACSU
[Raw transfer]




T4K_B_4(2PO3)
?
[Raw transfer]




T4K_A_3(2PO3)
?
[Raw transfer]




PMP_A_2(1MDO)
ARNB_SALTY
[Raw transfer]




PMP_B_6(3NU7)
WBPE_PSEAE
[Raw transfer]




T4K_A_3(2PO3)
?
[Raw transfer]




PMP_A_2(1MDO)
ARNB_SALTY
[Raw transfer]




PMP_A_4(3NU7)
WBPE_PSEAE
[Raw transfer]




2QR_A_2(4OCA)
?
[Raw transfer]




PLP_A_5(4QGR)
?
[Raw transfer]




PMP_A_3(4K2I)
NTDA_BACSU
[Raw transfer]




PLP_B_7(4QGR)
?
[Raw transfer]




PLP_A_5(4QGR)
?
[Raw transfer]




PMP_B_13(4K2I)
NTDA_BACSU
[Raw transfer]




PMP_A_3(2C81)
GLDSA_BACCI
[Raw transfer]




PMP_A_3(2C81)
GLDSA_BACCI
[Raw transfer]




PLP_A_3(1MDZ)
ARNB_SALTY
[Raw transfer]




PLP_A_5(2C7T)
GLDSA_BACCI
[Raw transfer]




PXG_A_2(1B9I)
RIFK_AMYMS
[Raw transfer]




PLP_A_2(1MDX)
ARNB_SALTY
[Raw transfer]




PLP_C_3(1B9H)
RIFK_AMYMS
[Raw transfer]




PLP_C_3(1B9H)
RIFK_AMYMS
[Raw transfer]




CIT_A_3(4LC3)
?
[Raw transfer]




CIT_B_9(4LC3)
?
[Raw transfer]




PLP_C_3(1B9H)
RIFK_AMYMS
[Raw transfer]




CIT_A_3(4LC3)
?
[Raw transfer]




PEG_A_10(3JU7)
?
[Raw transfer]




AKG_A_3(1MDX)
ARNB_SALTY
[Raw transfer]




21 PsiBlast_CBE 93.3367%-116 - C1 -4ZAH - WECE_ECOLI -
25 PsiBlast_CBE 92.7667%-116 - C1 -4ZAH - WECE_ECOLI -
27 PsiBlast_CBE 92.4467%-115 - C1 -4ZAH - WECE_ECOLI -
23 PsiBlast_CBE 92.0267%-115 - C1 -4ZAH - WECE_ECOLI -
98 HHSearch 91.6367%-119 - C1 -4ZAH - WECE_ECOLI -
22 PsiBlast_CBE 91.5967%-112 - C1 -4ZAH - WECE_ECOLI -
24 PsiBlast_CBE 91.3867%-117 - C1 -4ZAH - WECE_ECOLI -
1 PsiBlast_PDB 90.9767%-114 - C1 -4ZAH - WECE_ECOLI -
26 PsiBlast_CBE 90.8467%-112 - C1 -4ZAH - WECE_ECOLI -
29 PsiBlast_CBE 73.6937%-107 - C1 -3DR4 - GDPPS_CAUCR -
30 PsiBlast_CBE 72.9737%-107 - C1 -3DR4 - GDPPS_CAUCR -
8 PsiBlast_PDB 72.9040%-109 - C1 -1MDO 4.8 ARNB_SALTY
116 HHSearch 72.7041%-105 - C1 -1MDO 4.8 ARNB_SALTY
119 Fugue 72.5730%-108 - C1 -1O69 - ? -
6 PsiBlast_PDB 72.5437%-109 - C1 -3DR4 - GDPPS_CAUCR -
106 HHSearch 72.4338%-111 - C1 -2C81 4.1 GLDSA_BACCI
4 PsiBlast_PDB 72.3641%-101 - C1 -1MDZ 3.6 ARNB_SALTY
28 PsiBlast_CBE 72.2839%-106 - C1 -4LC3 2.8 ?
31 PsiBlast_CBE 72.0737%-108 - C1 -3DR4 - GDPPS_CAUCR -
3 PsiBlast_PDB 72.0341%-100 - C1 -1MDX 3.2 ARNB_SALTY
102 HHSearch 72.0039%-104 - C1 -4LC3 2.8 ?
7 PsiBlast_PDB 71.9041%-103 - C1 -4OCA 6.7 ?
9 PsiBlast_PDB 71.8039%-119 - C1 -2C7T 4.3 GLDSA_BACCI
10 PsiBlast_PDB 71.7039%-116 - C1 -2C81 4.1 GLDSA_BACCI
5 PsiBlast_PDB 71.1139%-104 - C1 -4LC3 2.8 ?
60 PsiBlast_CBE 68.7332%-111 - C1 -4QGR 4.5 ?
35 PsiBlast_CBE 68.5938%-112 - C1 -3NU7 4.2 WBPE_PSEAE
114 HHSearch 67.9033%-106 - C1 -4QGR 4.6 ?
32 PsiBlast_CBE 67.7137%-108 - C1 -2PO3 7.0 ?
111 HHSearch 67.1332%-109 - C1 -1B9H 2.9 RIFK_AMYMS
13 PsiBlast_PDB 67.0638%-116 - C1 -3NU7 2.7 WBPE_PSEAE
36 PsiBlast_CBE 66.6339%-116 - C1 -4K2M 4.5 NTDA_BACSU
61 PsiBlast_CBE 66.6032%-110 - C1 -4QGR 4.6 ?
16 PsiBlast_PDB 66.3439%-115 - C1 -4K2M 4.6 NTDA_BACSU
11 PsiBlast_PDB 65.9437%-104 - C1 -2PO3 7.5 ?
37 PsiBlast_CBE 65.7939%-115 - C1 -4K2I 4.2 NTDA_BACSU
118 Fugue 65.6030%-108 - C1 -1B9H 2.9 RIFK_AMYMS
15 PsiBlast_PDB 65.0439%-113 - C1 -4K2I 5.3 NTDA_BACSU
109 HHSearch 63.6137% -95 - C1 -2PO3 5.4 ?
38 PsiBlast_CBE 55.1837%-123 - C1 -1B9H 2.4 RIFK_AMYMS
39 PsiBlast_CBE 55.0337%-118 - C1 -1B9I 5.6 RIFK_AMYMS