@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1584: (2016-01-30 )
MLQVSVYRYNPDKDAAPYMQDFQVDTNGKDVMVLDVLALIKEQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQNDTPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FTN_B_11(3AE8)
SDHB_PIG
[Raw transfer]




BOL_C_11(3AED)
SDHB_PIG
[Raw transfer]




F6A_B_10(3ABV)
SDHB_PIG
[Raw transfer]




11J_C_10(3AEG)
SDHB_PIG
[Raw transfer]




JMP_C_11(3AE6)
SDHB_PIG
[Raw transfer]




12J_B_10(3AE7)
SDHB_PIG
[Raw transfer]




F9A_D_11(3AEA)
SDHB_PIG
[Raw transfer]




EBM_C_11(3AEC)
SDHB_PIG
[Raw transfer]




E23_C_10(4YTP)
?
[Raw transfer]




F7A_C_11(3AEB)
SDHB_PIG
[Raw transfer]




UQ_B_12(1YQ3)
SDHB_CHICK
[Raw transfer]




FD8_C_11(3AE9)
SDHB_PIG
[Raw transfer]




UQ_C_12(1YQ4)
SDHB_CHICK
[Raw transfer]




AT5_C_10(3AEE)
SDHB_PIG
[Raw transfer]




AT5_C_11(2ACZ)
SDHB_ECOLI
[Raw transfer]




F3S_B_8(3AE4)
SDHB_PIG
[Raw transfer]




F3S_B_8(1ZOY)
SDHB_PIG
[Raw transfer]




F3S_B_9(3SFE)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AE5)
SDHB_PIG
[Raw transfer]




F3S_B_8(1ZP0)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AE8)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AE2)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AE1)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AEF)
SDHB_PIG
[Raw transfer]




F3S_B_9(3SFD)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AEC)
SDHB_PIG
[Raw transfer]




F3S_B_8(3AE3)
SDHB_PIG
[Raw transfer]




F3S_B_26(2H89)
SDHB_CHICK
[Raw transfer]




8 PsiBlast_PDB 99.2271%-118 - C2 -2WU2 - SDHB_ECOLI -
34 PsiBlast_CBE 99.2071%-115 - C2 -2WP9 - SDHB_ECOLI -
24 PsiBlast_CBE 98.9171%-116 - C2 -2WU2 - SDHB_ECOLI -
22 PsiBlast_CBE 98.4571%-115 - C2 -2WU5 - SDHB_ECOLI -
32 PsiBlast_CBE 98.1171%-115 - C2 -2WDQ - SDHB_ECOLI -
9 PsiBlast_PDB 98.0371%-114 - C2 -2WU5 - SDHB_ECOLI -
5 PsiBlast_PDB 97.9871%-113 - C2 -2WDV - SDHB_ECOLI -
6 PsiBlast_PDB 97.8671%-117 - C2 -2WDR - SDHB_ECOLI -
10 PsiBlast_PDB 97.8271%-116 - C2 -2WP9 - SDHB_ECOLI -
30 PsiBlast_CBE 97.7471%-115 - C2 -2WDR - SDHB_ECOLI -
28 PsiBlast_CBE 97.5771%-114 - C2 -2WDV - SDHB_ECOLI -
7 PsiBlast_PDB 97.3171%-116 - C2 -2WS3 - SDHB_ECOLI -
26 PsiBlast_CBE 97.1471%-114 - C2 -2WS3 - SDHB_ECOLI -
4 PsiBlast_PDB 96.9671%-115 - C2 -2WDQ - SDHB_ECOLI -
108 HHSearch 96.3570%-115 - C2 -2WDQ - SDHB_ECOLI -
2 PsiBlast_PDB 96.2971%-116 - C2 -1NEN - SDHB_ECOLI -
1 PsiBlast_PDB 96.1271%-115 - C2 -1NEK - SDHB_ECOLI -
3 PsiBlast_PDB 95.6071%-117 - C2 -2ACZ 2.5 SDHB_ECOLI
109 HHSearch 89.6853%-112 - C2 -2H88 - SDHB_CHICK -
45 PsiBlast_CBE 89.0455%-114 - C2 -1ZP0 3.3 SDHB_PIG
13 PsiBlast_PDB 88.5155%-111 - C2 -3AE1 3.0 SDHB_PIG
49 PsiBlast_CBE 88.4954%-105 - C2 -2H89 3.7 SDHB_CHICK
14 PsiBlast_PDB 88.3955%-110 - C2 -3AE2 3.0 SDHB_PIG
55 PsiBlast_CBE 88.3354%-104 - C2 -1YQ3 2.4 SDHB_CHICK
16 PsiBlast_PDB 88.3355%-110 - C2 -3AE4 3.4 SDHB_PIG
54 PsiBlast_CBE 87.9554%-108 - C2 -1YQ4 3.0 SDHB_CHICK
19 PsiBlast_PDB 87.9155%-116 - C2 -3AE7 3.9 SDHB_PIG
43 PsiBlast_CBE 87.5455%-108 - C2 -3SFE 3.2 SDHB_PIG
35 PsiBlast_CBE 87.5455%-111 - C2 -3AEG 4.5 SDHB_PIG
40 PsiBlast_CBE 87.3255%-111 - C2 -3AEB 3.8 SDHB_PIG
20 PsiBlast_PDB 87.2955%-108 - C2 -3AE8 4.3 SDHB_PIG
46 PsiBlast_CBE 87.2155%-112 - C2 -1ZOY 3.6 SDHB_PIG
44 PsiBlast_CBE 87.2055%-108 - C2 -3SFD 2.7 SDHB_PIG
39 PsiBlast_CBE 87.1955%-110 - C2 -3AEC 4.3 SDHB_PIG
36 PsiBlast_CBE 87.1555%-110 - C2 -3AEF 3.0 SDHB_PIG
42 PsiBlast_CBE 87.0555%-108 - C2 -3AE9 4.4 SDHB_PIG
37 PsiBlast_CBE 87.0055%-110 - C2 -3AEE 2.6 SDHB_PIG
12 PsiBlast_PDB 86.9755%-111 - C2 -3ABV 4.6 SDHB_PIG
15 PsiBlast_PDB 86.9355%-108 - C2 -3AE3 3.3 SDHB_PIG
11 PsiBlast_PDB 86.8155%-110 - C2 -4YTP 3.1 ?
41 PsiBlast_CBE 86.7955%-111 - C2 -3AEA 3.8 SDHB_PIG
17 PsiBlast_PDB 86.7755%-112 - C2 -3AE5 3.0 SDHB_PIG
18 PsiBlast_PDB 86.5455%-114 - C2 -3AE6 4.0 SDHB_PIG
38 PsiBlast_CBE 85.6455%-107 - C2 -3AED 4.9 SDHB_PIG