@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4861: (2016-03-02 )
MRTTPHLMLEPAFHPGLDTAGSGRDAIGLGAATSGRLDARHGTILSLEDINVSFDGFKALRDLTLYIGVGELRCIIGPNGAGKTTLMDVITGKTRPQSGTAYFGDTLDLTRMSEVQIAQAGIGRKFQKPTVFEALSVFENLELAQRADKSVWASLRARLDGTQRERIEEVLATIRLLESRQRPAGLLSHGQKQFLEIGMLLVQEPQLLLLDEPVAGMTDAETEFTAELFKSLARKHSLMVVEHDMGFVGSIADHVTVLHQGHVLAEGSLAEVQADEQVIEVYLGR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(1JI0)
?
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]




ADP_C_12(1G9X)
LIVG_METJA
[Raw transfer]




ADP_B_10(1G9X)
LIVG_METJA
[Raw transfer]




MES_C_5(2ZU0)
SUFC_ECOLI
[Raw transfer]




53 Fugue 93.7526%-103 - C1 -1Z47 - ? -
1 PsiBlast_PDB 89.1030%-109 - C1 -1G6H 6.4 LIVG_METJA
3 PsiBlast_PDB 88.7331%-103 - C1 -1GAJ - LIVG_METJA -
48 Fugue 88.1227%-107 - C1 -3TUZ - METN_ECOLI -
46 Fugue 87.8131%-118 - C1 -1G6H 6.5 LIVG_METJA
11 PsiBlast_PDB 87.4728%-106 - C1 -4P32 - LPTB_ECOLI -
50 Fugue 87.4628%-100 - C1 -1OXS - ? -
13 PsiBlast_PDB 86.2328%-105 - C1 -4QC2 - ? -
19 PsiBlast_PDB 85.3627%-107 - C1 -4P33 - LPTB_ECOLI -
41 HHSearch 85.1528%-104 - C1 -3GFO - ECFA3_CLOP1 -
22 PsiBlast_CBE 85.0631%-110 - C1 -1G9X 5.8 LIVG_METJA
2 PsiBlast_PDB 83.6931%-102 - C1 -1G9X 4.7 LIVG_METJA
21 PsiBlast_CBE 83.1731%-104 - C1 -1G9X 4.8 LIVG_METJA
42 HHSearch 82.6831%-100 - C1 -1G6H 6.5 LIVG_METJA
4 PsiBlast_PDB 79.9030% -94 - C1 -3GFO - ECFA3_CLOP1 -
24 PsiBlast_CBE 77.2331% -95 - C1 -2ZU0 2.2 SUFC_ECOLI
33 HHSearch 76.3830% -96 - C1 -1OXX - ? -
32 HHSearch 76.1828%-100 * C1 *3TUI - METN_ECOLI -
25 HHSearch 76.0227% -97 - C1 -1Z47 - ? -
31 HHSearch 74.7427%-102 - C1 -3RLF - MALK_ECOLI -