@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5039: (2016-03-04 )
MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADGMVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDRNRPLLQKPNPGQILRDLMALRDPLYREIADVVVETDERPPRLVVQEILERLRKLPPR

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_13(2DFT)
AROK_MYCTU
[Raw transfer]




ADP_C_8(4BQS)
AROK_MYCTU
[Raw transfer]




ACP_B_2(1ZYU)
AROK_MYCTU
[Raw transfer]




ADP_A_10(1L4U)
AROK_MYCTU
[Raw transfer]




ADP_D_15(2DFT)
AROK_MYCTU
[Raw transfer]




ADP_B_6(4BQS)
AROK_MYCTU
[Raw transfer]




ADP_A_4(4BQS)
AROK_MYCTU
[Raw transfer]




ADP_A_3(2DFN)
AROK_MYCTU
[Raw transfer]




ADP_A_5(1U8A)
AROK_MYCTU
[Raw transfer]




ADP_A_5(1WE2)
AROK_MYCTU
[Raw transfer]




ANP_A_2(3BAF)
AROK_MYCTU
[Raw transfer]




ADP_A_3(2IYQ)
AROK_MYCTU
[Raw transfer]




ADP_A_3(2IYZ)
AROK_MYCTU
[Raw transfer]




ADP_A_2(2IYV)
AROK_MYCTU
[Raw transfer]




ADP_A_8(1L4Y)
AROK_MYCTU
[Raw transfer]




ADP_A_2(2IYV)
AROK_MYCTU
[Raw transfer]




ATP_A_2(2IYW)
AROK_MYCTU
[Raw transfer]




S3P_A_2(2IYY)
AROK_MYCTU
[Raw transfer]




ADP_A_2(2IYU)
AROK_MYCTU
[Raw transfer]




S3P_A_3(3MUF)
AROK_HELPY
[Raw transfer]




SKM_C_3(1ZUI)
AROK_HELPY
[Raw transfer]




ADP_B_7(2SHK)
AROL_DICCH
[Raw transfer]




OSA_A_4(3N2E)
AROK_HELPY
[Raw transfer]




OSA_B_7(3N2E)
AROK_HELPY
[Raw transfer]




PEG_A_6(3VAA)
AROK_BACTN
[Raw transfer]




PEG_A_6(3VAA)
AROK_BACTN
[Raw transfer]




SKM_A_7(2G1K)
AROK_MYCTU
[Raw transfer]




SKM_A_2(2IYX)
AROK_MYCTU
[Raw transfer]




SKM_A_3(2IYR)
AROK_MYCTU
[Raw transfer]




SKM_B_4(2IYR)
AROK_MYCTU
[Raw transfer]




SKM_A_2(2IYS)
AROK_MYCTU
[Raw transfer]




ADP_B_13(2DFT)
AROK_MYCTU
[Raw transfer]




ADP_D_15(2DFT)
AROK_MYCTU
[Raw transfer]




112 HHSearch 95.1151% -99 - C1 -1KAG - AROK_ECOLI -
1 PsiBlast_PDB 94.3451%-100 - C1 -1KAG - AROK_ECOLI -
111 HHSearch 93.9044% -87 - C1 -3TRF - AROK_COXBU -
101 Fugue 92.8949% -91 - C1 -1KAG - AROK_ECOLI -
2 PsiBlast_PDB 91.6045% -86 - C1 -3TRF - AROK_COXBU -
115 HHSearch 91.2944% -93 - C1 -2IYV 7.6 AROK_MYCTU
11 PsiBlast_PDB 91.0644% -95 - C1 -2IYY 3.9 AROK_MYCTU
10 PsiBlast_PDB 90.9144% -92 - C1 -2IYX 3.6 AROK_MYCTU
19 PsiBlast_PDB 90.7244% -95 - C1 -2G1K 3.4 AROK_MYCTU
15 PsiBlast_PDB 90.5444% -98 - C1 -1U8A 7.5 AROK_MYCTU
25 PsiBlast_CBE 90.5244% -92 - C1 -4BQS 7.2 AROK_MYCTU
21 PsiBlast_CBE 89.4745% -86 - C1 -3TRF - AROK_COXBU -
23 PsiBlast_CBE 89.4344% -95 - C1 -4BQS 8.0 AROK_MYCTU
3 PsiBlast_PDB 89.4344% -92 - C1 -2IYQ 7.8 AROK_MYCTU
12 PsiBlast_PDB 88.9144% -96 - C1 -2IYZ 7.2 AROK_MYCTU
13 PsiBlast_PDB 88.6144% -97 - C1 -1L4U 8.4 AROK_MYCTU
24 PsiBlast_CBE 88.5344% -88 - C1 -4BQS 7.0 AROK_MYCTU
7 PsiBlast_PDB 88.5144% -91 - C1 -2IYU 7.1 AROK_MYCTU
14 PsiBlast_PDB 88.4844% -98 - C1 -1L4Y 7.0 AROK_MYCTU
17 PsiBlast_PDB 87.9444% -96 - C1 -1ZYU 6.4 AROK_MYCTU
26 PsiBlast_CBE 87.7744%-102 - C1 -3BAF 6.7 AROK_MYCTU
5 PsiBlast_PDB 87.4144% -89 - C1 -2IYS 2.4 AROK_MYCTU
22 PsiBlast_CBE 87.2344% -88 - C1 -2IYR 3.8 AROK_MYCTU
9 PsiBlast_PDB 86.7944% -86 - C1 -2IYW 7.8 AROK_MYCTU
20 PsiBlast_PDB 86.6744% -92 - C1 -2DFN 7.5 AROK_MYCTU
16 PsiBlast_PDB 85.7244% -85 - C1 -1WE2 7.6 AROK_MYCTU
8 PsiBlast_PDB 85.5644% -85 - C1 -2IYV 7.6 AROK_MYCTU
4 PsiBlast_PDB 84.8044% -89 - C1 -2IYR 2.9 AROK_MYCTU
28 PsiBlast_CBE 84.3544% -88 - C1 -2DFT 6.5 AROK_MYCTU
31 PsiBlast_CBE 84.2044% -98 - C1 -2DFT 3.0 AROK_MYCTU
30 PsiBlast_CBE 83.8044% -89 - C1 -2DFT 7.1 AROK_MYCTU
34 PsiBlast_CBE 83.5933% -93 - C1 -3VAA 2.2 AROK_BACTN
117 HHSearch 81.0133% -85 - C1 -3VAA 2.2 AROK_BACTN
35 PsiBlast_CBE 80.0634%-108 - C1 -2SHK 5.2 AROL_DICCH
29 PsiBlast_CBE 76.9544% -86 - C1 -2DFT 3.0 AROK_MYCTU
43 PsiBlast_CBE 66.5433% -75 - C1 -3MUF 4.7 AROK_HELPY
46 PsiBlast_CBE 66.0533% -80 - C1 -1ZUI 5.1 AROK_HELPY
41 PsiBlast_CBE 65.6133% -80 - C1 -3N2E 6.3 AROK_HELPY
42 PsiBlast_CBE 64.0133% -80 - C1 -3N2E 5.8 AROK_HELPY