@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0047: (2016-03-11 )
MYKKLATVGMTVLLVGALSACSFNDDKDTSSNNSNNETTSSKSSNNESSSDSLQNKSLDMSYEDAINAFKDKHSDAEISSVELEKSLGKYVYKVDGISNDNEYEMKFNAETKEQLSDETDRLDREDAGGVEKENEKLSLDGIKSPKEAMDKAVSEQAGDVTSWKIERELDTTYYEVTVKQDNNKYEIKLNAKTLEILQTEQDD
Atome Classification :
(20 SA)
---------------------....-.....10........----20.....----.-..30........40-........50.---.......60....--....70....---------------..----------..80..---.--.-----...-.90-------........----.-100-----------------.......110.......120....-----...130.-....-.--.140-........150---..---------------.-.--..---.-------.-.160...-.----------...-----170--.....----------------------....180--.--.--.-.....--------------------190.-----......200.---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------MY
K
K
-
L
A
T
V
G
M
T
V
L
L
V
G
A
L
S
----ACSFNDD----K-DTSSNNSNNETTSS-KSSNNESSSDS---LQNKSLD
M
S
Y
E
D
A
--
I
N
A
F
K
DKHSD---------------AE----------
I
S
S
V
E
L
---
E
--
K
-----
S
LG-
K
Y
--------
V
Y
K
VDGIS----N-DN
E
-----------------
Y
E
M
K
FNA
E
T
K
E
Q
LS
D
E
T
DRLDRED-----AGGVEKE-N
E
K
L-S--LDG--IK
S
P
K
E
A
M
D
-----
K
A
---------------
V
-
S
--
E
Q---A-------G-DVT
S
W
K
I
-
E
----------
R
EL-----D----T
T
Y
Y
E
----------------------
V
T
V
KQD---N--
N
--
K
-
Y
E
I
K
L--------------------N
A
K
T
-----
L
E
I
L
QTEQDD---------
1
PsiBlast_PDB
96.01
39%
-6
- C8 -
4EXR
2
?
A:
[22-173]
---------------------------------------------------------------------------------
N
E
N
---
L
M
E
Q
D
F
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V
P
Y
T
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A
--
I
N
I
F
K
D
K
Y
K
D
---------------
A
D
----------
I
V
D
L
S
L
---
E
--
R
-----
D
L
N
-
K
F
--------
V
Y
T
V
E
G
V
D
----
D
-
N
N
E
-----------------
Y
K
M
K
I
D
A
N
T
K
D
V
L
E
D
K
T
E
K
L
D
S
E
D
-----
L
N
G
V
A
R
K
--
E
K
L
-
D
--
L
N
D
--
I
M
T
P
Q
Q
A
M
E
-----
I
A
---------------
L
-
K
--
E
Q
---
N
-------
G
-
I
V
K
E
W
S
L
-
D
----------
K
D
L
-----
D
----
V
T
F
Y
K
----------------------
I
R
I
D
K
D
---
K
--
N
--
E
-
Y
D
I
K
V
--------------------
D
S
K
K
-----
G
T
V
L
K
V
E
K
E
----------
55
Fugue
68.14
19%
25
- C3 -
4RWR
-
?
A:
[55-323]
VYREKQKKVESLP
M
E
E
Y
V
T
G
V
V
A
S
E
M
N
A
S
F
E
I
E
A
L
K
A
Q
A
L
A
----
A
R
T
F
V
V
Q
----
R
M
L
S
G
G
K
K
N
N
A
D
V
T
D
T
-
D
Q
V
Y
K
---
S
K
E
---
E
L
K
K
Q
W
G
N
N
Y
E
N
N
--
L
K
K
I
E
E
A
V
S
K
---------------
T
A
G
Q
V
L
T
Y
EGKP
I
S
A
S
F
F
---
S
--
T
-----
S
N
G
-
R
T
--------
E
N
A
A
D
Y
W
G
----
N
-
D
Y
P
-----------------
Y
-
L
K
S
V
D
S
P
W
D
Q
A
S
P
K
F
T
S
E
Q
I
F
T
-----
V
A
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F
Q
K
R
L
G
V
K
V
-
L
--
A
D
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--
K
V
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D
I
K
G
R
T
EGKRV
K
D
---------------
V
-
A
--
F
Q
---
G
-------
K
-
T
L
T
G
R
D
V
-
R
----------
D
K
L
-----
E
----
L
R
S
S
D
----------------------
F
T
W
K
Q
E
---
G
--
D
--
K
-
I
V
V
T
T
K
G
FGHGVGMS
Q
Y
G
A
N
G
M
A
A
E
G
K
K
Y
-----
T
D
I
V
A
H
Y
Y
K
G
V
E
I
K
T
MNDY
52
Fugue
67.88
16%
14
- C4 -
4XGC
1
ORC2_DROME
B:
[62-352]
-----E
G
S
I
N
A
I
M
E
E
Y
R
S
Y
F
P
K
W
M
C
-
I
L
N
E
G
F
N
I
L
L
Y
G
L
G
S
K
H
Q
L
L
Q
S
F
H
R
E
VLHK
Q
-
T
V
L
V
V
N
G
F
F
P
S
L
T
I
-
K
D
M
L
D
S
I
T
S
D
I
---
L
D
A
G
I
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A
N
P
H
E
A
--
V
D
M
I
E
E
E
F
A
L
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PE
T
H
L
F
L
I
V
HNLDG
A
M
----------
L
R
N
V
K
A
---
Q
--
A
-----
I
L
S
-
R
L
A
R
IPN
I
H
L
L
A
S
I
D
H
I
N
----
T
-
P
L
L
-----------------
W
D
Q
G
K
L
C
S
F
N
F
S
W
W
D
C
T
T
M
L
P
Y
T
N
-----
E
T
A
F
E
N
S
-
L
L
V
L
-
A
--
L
S
S
--
M
R
S
V
F
S
S
L
T
-----
T
N
---------------
S
-
R
--
G
I
---
Y
-------
M
-
L
I
V
K
Y
Q
L
-
K
N
KGNATGMP
F
R
D
L
-----
Y
----
S
S
C
R
E
A
FLVSS
D
L
A
L
R
A
Q
L
T
E
F
L
D
H
KL
V
K
S
K
R
S
---
S
--
E
--
Q
-
L
T
I
P
I
--------------------
D
G
A
L
-----
L
Q
Q
F
L
E
E
Q
E
----------
12
HHSearch
61.79
18%
-20
- C8 -
3ELG
1
?
A:
[14-127]
------------------------------------------------------------------------------------------------
P
V
A
A
--
R
E
M
I
G
K
H
F
S
Q
---------------
T
K
----------
V
A
Y
I
K
I
---
E
--
K
-----
D
L
F
Q
T
T
--------
S
Y
D
V
K
L
A
D
----
G
---------------------
I
E
L
E
F
N
S
-
K
G
E
W
L
E
I
D
C
K
N
K
S
-------------------
V
-
P
---
S
----
T
F
I
P
Q
A
I
S
-----
K
Y
---------------
M
K
A
--
N
Y
---
N
-------
G
H
K
T
V
K
I
E
R
-
N
-----------------------
R
K
G
Y
E
----------------------
L
T
L
E
N
----------
G
-
L
E
V
D
F
--------------------
D
Q
-
F
-----
G
G
F
L
K
L
S
------------
8
HHSearch
61.08
18%
5
- C8 -
3U1W
3
?
A:
[9-128]
-----------------------------------------------------------------------------------------------
P
L
P
P
V
--
E
N
A
F
Q
E
K
Y
P
D
---------------
A
K
----------
N
P
V
F
E
I
---
E
---------
G
N
-----------
Y
Y
V
V
D
F
N
N
----
G
-
G
S
E
-----------------
T
T
A
W
F
T
D
-
Q
G
I
W
M
M
E
K
I
D
I
S
F
------------------------------
A
Q
L
P
A
A
V
S
-----
T
A
---------------
F
-
K
Q
S
F
Y
---
S
-------
N
W
T
V
D
D
T
Y
A
I
N
----------
R
L
N
-----
M
----
G
I
V
Y
K
----------------------
I
E
A
E
Q
S
---
N
--
S
--
E
-
V
D
L
Y
Y
--------------------
S
Q
Y
------
G
N
L
I
K
A
V
D
-----------
6
HHSearch
60.01
18%
-2
- C8 -
2GU3
1
YPMB_BACSU
A:
[12-133]
-----------------------------------------------------------------------------------------------
G
H
E
A
A
--
A
A
E
A
K
K
E
T
D
L
---------------
A
H
----------
V
D
Q
V
E
T
---
F
--
V
-----
G
K
--
E
K
--------
Y
Y
V
V
K
G
T
D
----
K
K
G
T
A
-----------------
L
Y
V
W
V
P
A
D
K
K
A
K
I
L
-------------------------
S
K
-
E
--
A
K
E
--
G
I
S
E
D
K
A
A
K
-----
I
I
---------------
K
-
D
--
E
G
---
L
-------
V
S
K
Q
K
E
V
H
L
-
A
----------
R
E
G
-----
N
----
V
L
L
W
E
----------------------
V
T
Y
L
D
K
---
E
--
G
--
Q
Y
S
L
S
Y
V
--------------------
D
F
T
T
-----
G
K
I
L
K
N
-------------
7
HHSearch
58.47
15%
2
- C8 -
3U1W
6
?
A:
[137-253]
---------------------------------------------------------------------------------------------
I
V
I
P
K
E
V
--
S
N
L
M
E
I
T
F
A
N
---------------
A
E
----------
L
L
D
I
Q
Q
---
N
---------
S
L
-----------
G
Y
E
L
D
M
I
D
----
N
-
Q
I
Y
-----------------
K
V
A
Q
L
N
K
-
D
Y
R
W
Q
S
T
T
W
A
M
S
E
------------------------------
Q
E
V
P
Q
I
V
M
-----
Q
G
---------------
F
-
E
S
S
A
Y
---
A
-------
S
D
K
V
Q
S
I
Y
T
-
L
----------
L
N
A
-----
N
----
G
T
F
Y
L
----------------------
F
K
V
S
H
N
---
G
--
Q
--
D
-
K
T
I
T
F
--------------------
D
V
-
F
-----
G
N
I
V
---------------
17
HHSearch
57.67
26%
-34
- C8 -
3ELG
1
?
A:
[13-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
V
A
A
R
-----
E
M
---------------
I
G
K
--
H
F
---
S
-------
Q
T
K
V
A
Y
I
K
I
-
E
----------
K
D
L
F----
Q
----
T
T
S
Y
D
----------------------
V
K
L
A
D
G
-----------
I
E
L
E
F
--------------------
N
S
-
K
-----
G
E
W
L
E
I
D
C
K
----------
14
HHSearch
56.81
16%
12
- C8 -
3NQZ
-
?
A:
[68-175]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
T
-----------------
V
S
L
T
F
N
--
N
G
M
L
K
K
A
H
G
A
A
V
Y
N
I
D
--------------
E
D
L
S
D
--
V
S
A
--
K
L
T
K
K
D
A
I
L
-----
K
G
---------------
S
-
K
--
T
G
---
I
A
A
K
S
VGL
K
K
H
N
E
Q
S
R
L
-
A
I
W
V
D
D-----
Q
N
K
-----
A
----
H
L
V
Y
E
----------------------
V
S
Y
V
T
Y
G
K
S
P
--
S
--
R
-
P
Y
L
I
I
--------------------
D
A
N
T
-----
G
E
V
L
L
S
Y
------------
11
HHSearch
56.63
15%
-17
- C8 -
3DB7
5
?
A:
[14-126]
------------------------------------------------------------------------------------------------
P
Q
L
A
--
Q
Q
F
I
K
Q
H
F
S
D
---------------
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----------
V
A
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A
K
M
---
E
--
S
-----
D
F
L
-
Y
K
--------
S
Y
E
V
I
F
T
N
----
G
---------------------
N
K
V
E
F
D
K
-
K
G
N
W
E
E
V
D
C
K
H
T
S
-------------------
V
-
P
---
V
A
----
I
I
P
A
A
I
Q
-----
K
Y
---------------
V
T
T
--
N
Y
---
P
-------
D
A
K
V
L
K
I
E
R
-
D
----------
K
-------------
K
D
Y
E
----------------------
V
K
L
S
N
R
-----------
T
E
L
K
F
--------------------
D
L
-
K
-----
F
N
L
I
D
I
D
------------
48
Fugue
54.33
17%
30
- C7 -
4O8U
-
?
A:
[1-227]
------S
R
I
V
A
A
D
T
G
G
A
V
L
D
E
T
F
E
P
-
I
G
L
I
A
T
V
A
V
L
V
E
-------------------------
K
P
Y
R
S
A
K
E
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M
V
K
Y
A
N
P
Y
D
Y
D
L
---
T
G
R
Q
A
I
R
D
E
V
L
L
A
--
I
E
L
A
R
K
V
K
P
D
-----------------------------
V
I
H
L
---
D
--
S
-----
T
L
G
-
G
I
E-------
L
R
K
L
D
E
P
T
I
D
A
L
G
-
I
S
D
-----------------
K
G
K
E
V
W
K
E
L
S
K
D
L
Q
P
L
A
R
K
F
W
E
E
T
N
I
E
I
V
A
I
G
K
S
S
V
-
P
V
R
I
-
A
E
I
Y
A
G
--
I
Y
S
A
K
W
G
I
E
-----
N
V
EKEG
H
L
I
I
G
L
P
RY
M
E
V
-
N
--
I
K
---
D
-------
G
-
K
I
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L
-
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----------
P
R
E
-----
G
----
G
L
Y
G
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----------------------
A
E
V
S
V
P
---
E
--
G
V
-
K
-
W
E
I
Y
P
--------------------
N
P
V
A
RR
F
M
I
F
E
I
F
S
--------------
20
HHSearch
52.24
17%
19
* C8 *
2O3O
1
YYCI_BACSU
A:
[143-252]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
-----------------
V
V
L
H
L
N
G
-
K
N
E
V
V
S
Y
D
Q
T
T
L
E
T
F
K
---------------
Q
I
-
Q
--
K
E
S
--
L
I
T
E
M
D
A
V
E
-----
L
L
---------------
Y
-
Y
--
Q
N
QLK
E
-------
Y
S
T
V
K
S
C
K
F
-
G
----------
Y
V
A
QYPLT
S
T
Q
V
L
A
P
V
W
R
----------------------
I
T
V
E
Y
E
---
K
EK
K
T
V
Q
-
E
Y
F
T
V
--------------------
N
A
L
E
-----
S
T
I
L
D
T
-------------
13
HHSearch
51.15
15%
9
- C8 -
2GU3
-
YPMB_BACSU
A:
[70-132]
-----------------------------------------------------------------------------------------
E
A
K
E
G
I
S
E
D
K
A
--
A
K
I
I
K
D
E
G
L
V
---------------
S
K
----------
Q
K
E
V
H
L
---
A
--
R
-----
E
G
N
-
V
L
--------
L
W
E
V
T
Y
L
D
----
K
E
G
Q
Y
-----------------
S
L
S
Y
V
D
F
T
T
G
K
I
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
50.27
13%
-7
- C8 -
3DB7
3
?
A:
[15-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
A
Q
Q
-----
F
I
---------------
K
-
Q
--
H
F
---
S
-------
D
S
K
V
A
L
A
K
M
-
E
----------
S
D
F
-----
L
----
Y
K
S
Y
E
----------------------
V
I
F
T
N
G
-----------
N
K
V
E
F
--------------------
D
K
-
K
-----
G
N
W
E
E
V
D
C
K
----------
18
HHSearch
49.93
19%
7
- C8 -
3NQZ
-
?
A:
[98-175]
------------------------------------------------------------------------------------------
V
S
A
K
L
T
K
K
D
A
--
I
L
K
G
S
K
T
G
I
A
A
K
S
VGLK--------
K
H
----------
N
E
Q
S
R
L
A
I
W
V
D
D
Q
-----
N
K
A
-
H
L
--------
V
Y
E
V
S
Y
V
T
Y
G
K-
S
-
P
S
R
-----------------
P
Y
L
I
I
D
A
N
T
G
E
V
L
L
S
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.33
25%
52
- C8 -
1SI8
1
?
A:
[329-435]
----------------------------------
L
L
Q
G
R
L
F
----
A
Y
G
D
A
H
R
----
H
-
R
V
G
A
N
S
H
Q
L
P
I
N
Q
A
-
K
A
P
V
N
N
Y
Q
K
D
G
N
MR
F
N
N
G
N
S
E
I
N
Y
E
P
----
N
S
Y
T
E
T
P
K
E
D
PT------------
A
K
----------
I
S
S
F
E
V
---
E
--
G
-----
N
V
G
-
N
Y
--------
S
Y
N
Q
D
H
F
T
----
Q
-
A
N
A
-----------------
L
Y
N
L
L
P
S
E
E
K
E
N
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
45.64
21%
50
- C7 -
1EFN
2
NEF_HV1BR
B:
[18-150]
-----------------------------------------------------------------------------------
R
---
P
Q
V
P
L
R
P
M
T
Y
K
A
A
V
D
L
S
H
F
L
K
E
K
G
G
---------------
L
E
GL--------
I
H
S
Q
R
R
---
Q
--
D
-----
I
L
D
-
L
W
--------
I
Y
H
T
Q
G
Y
F
----
P
-
D
W
Q
NYTPGP
G
V
R
Y
P
LTFGWC
Y
K
L
V
P
V
R
E
V
L
E
W
R
F
D
--
S
R
L
A
F
H
H
-----
V
A
R
E
L
H
P
-
E
Y
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
44.10
34%
45
- C8 -
2KJP
-
A:
[16-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
I
E
V
G
-
D
K
I
I
-
S
--
A
D
G
KN
Y
Q
S
A
E
K
L
I
D
-----
Y
I
---------------
S
-
S
--
K
K
---
A
-------
G
-
D
K
V
T
L
K
I
-
E
----------
R
E
E
-----
K
----
E
K
R
V
T
----------------------
L
T
L
K
Q
-----------------------------------------------------------------
22
HHSearch
43.41
11%
19
- C8 -
2LYX
-
YQZG_BACSU
A:
[19-83]
---------------------------------------------------------------------------------------------------
A
--
V
K
E
A
K
K
R
Y
P
L
---------------
A
Q
----------
V
L
F
K
Q
K
---
V
--
W
D
R
K
R
K
D
E
A
-
V
K
--------
Q
Y
H
L
T
L
R
E
----
G
-
S
K
E
F
G
V
F
-------------
V
T
I
S
F
D
P
Y
S
Q
K
V
N
K
I
A
I
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
39.34
21%
58
- C7 -
2IFO
-
?
?:
[1-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
-----
G
G
G
V
D
V
G
-
D
V
V
S
-
A
--
I
Q
G
--
A
A
G
P
I
A
A
I
G
-----
G
A
---------------
V
-
L
--
T
V
---
M
-------
V
-
G
I
K
V
Y
K
W
-
V
----------
R
R
A
-----
M
-----------------------------------------------------------------------------------------------------