@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00320: (2016-06-01 )
MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADDRDLLIVEENKQEALSAFDICQKKVIEHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGPCGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDIGEMITTANGPAKVVGLNILERVLQVELINREKVIEYTWEELLEEGVVSAQTTD
Atome Classification :
(20 SA)
------------------.........10.....---...-20...--------.----....30.......-.--40.----------------......--.50----------........60------------.........--70--........80........90---------..-----.....-----------.-.100.....--..110......---------.120.-......---------130...------..---..140------......-----.--..150.......160.------...--------...170..--....---------.180.....--------------.-.---------190.......200....--.-..210..-----.-....220........--230---.-----........--240...--------....250-------...-----...--.260.......270...------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------MYN
V
I
G
V
R
F
K
KA
G
K
I
Y
---
Y
FD-PN
G
F
H
--------I----EHD
S
C
V
I
V
E
T
VRG-V--EY
G
----------------
Q
V
V
I
AN--KQV----------DEH
D
V
V
L
P
L
-------------
R
K
V
I
R
VADD--R
D
--
L
L
I
V
EEN
K
Q
E
A
L
S
A
F
D
I
C
Q
----------
K
K
-----
V
I
EHG-----------L-
D
M
K
L
V
D
V
E
F
--
T
FDR
N
K
V
I
F
Y
F
---------TADGR-V
D
F
R
E
L
---------
V
K
D
L
A
S
------
I
F
---
K
T
R
--------
I
E
L
R
QI-----G--V
R
D
E
A
K
M
LGGI
G
P
C
G
R
------
M
L
C
--------
C
S
T
F
LGDF--E
P
V
S
---------
I
K
M
AKDQNL--------------S-L---------N
P
T
K
I
S
G
L
C
G
R
L
M
C
C
L
K--Y-ENDEY
E
T
-----
A
-
K
E
QLP
D
-
I
G
E
M
I
TTA--N-----G-----P
A
K
V
V
G
L
N
--
I
L
E
R
V
L
--------
Q
V
E
LI
N
R
-------
E
K
V
-----
I
E
Y
--
T
W
E
E
L
L
EEGVVSAQTTD------------------------------------
29
Fugue
88.47
14%
-50
- C5 -
1SRQ
2
RPGP1_HUMAN
A:
[4-339]
-----------------------
K
V
K
L
E
C
N
P
T
A
R
---
I
Y
R
-
K
H
F
L
G
--------
K
----
E
H
F
N
Y
Y
S
L
D
T
-------
A
L
G
----------------
H
L
V
F
S
L
--
K
Y
D
----------
V
I
G
D
-
Q
E
H
L
-------------
R
L
L
L
R
T
K
C
R
--
T
Y
--
H
D
V
I
P
I
S
C
L
F
P
N
V
V
Q
M
A
K
L
V
CEDVNVD
R
F
Y
P
-----
V
L
Y
P
K
-----------
A
-
S
R
L
I
V
T
F
D
E
H
V
I
S
N
N
F
K
F
G
V
I
Y
---------
Q
K
L
G
Q
-
T
S
E
E
E
L
F
STNEES
P
A
F
V
E
F
L
E
------
F
L
---
G
Q
K
--------
V
K
L
Q
D
F
KGFRG
G
--
L
D
V
T
H
G
Q
T
G
T
E
S
V
Y
C
N
F
RN
K
E
I
M
F
H
--------
V
S
T
K
L
P
Y
T
--
E
G
D
A
---------
Q
Q
L
Q
R
K
R
H
I
G
N
DI
V
A
V
V
F
Q
D
E
N
T
P
-
F
---------
V
P
D
M
I
A
S
N
F
L
H
A
Y
V
V
V
Q
--
A
E
G
G
P
L
Y
K
V
-----
S
-
V
T
A
R
D
D
-
V
P
F
F
G
P
P
L
--
P
-----
D
-----
P
A
V
F
R
K
G
P
--
E
F
Q
E
F
L
--------
L
T
K
L
I
N
A
-------
E
Y
A
C
Y
K
AE
K
F
A
--
K
L
E
E
R
T
R
A
A
L
L
E
T
L
Y
E
E
L
H
I
H
S
Q
S
M
M
GLGG-----------------------
30
Fugue
85.77
14%
-61
- C4 -
2CY8
-
?
A:
[2-445]
----------S
I
L
N
D
Y
K
R
K
T
E
G
S
V
F
W
A
Q
R
A
R
S
V
M
PDG
A
F
D
-
P
H
G
L
F
--------
I
----
S
D
A
Q
G
V
H
K
T
D
V
D
G
-
N
--
V
Y
L
DFFGGHGALVLGHGH
P
R
V
N
A
A
I
--
A
E
A
L
S
H
GVQYAAS
H
P
L
E
V
R
W
A
E
-------------
R
I
V
A
A
F
P
S
I
--
R
K
--
L
R
F
T
G
S
G
T
E
T
T
L
L
A
L
R
V
A
R
----------
A
F
T
GRR
M
I
L
R
F
E
GTTAN
T
L
L
I
R
P
D
-
D
I
E
G
M
R
E
V
F
--
A
N
H
G
S
D
I
A
A
F
I
A
E
P
VGSHFG
V
T
P
V
S
-
D
S
F
L
R
E
---------
G
A
E
L
A
R
Q
Y
G
A
L
F
I
L
D
EV
I
S
G
--------
F
R
V
G
N
H
-----
G
--
M
Q
A
L
L
D
V
Q
P
D
L
T
C
L
A
K
------
A
S
A
--------
G
G
L
P
G
G
I
L
G
G
R
E
D
V
---------
M
G
V
L
S
R
G
S
F
--------------
T
-
G
---------
N
P
I
T
A
A
A
A
I
A
A
I
D
T
I
L
E
D
D
V
-
C
A
K
I
N
D
L
-----
G
-
Q
F
A
R
E
A
-
M
N
H
L
F
A
R
K
--
G
-----
L
-----
N
W
L
A
Y
G
R
F
--
S
G
F
H
L
M
P
GLPPNTT
D
T
G
S
I
T
R
AEVARPD
V
K
M
-----
I
A
A
--
M
R
M
A
L
I
L
E
G
V
D
I
G
G
R
G
S
V
F
L
S
AQHE
R
E
H
V
E
H
L
V
T
T
F
D
R
V
L
D
R
L
A
D
E
NLLSWQG
26
Fugue
68.97
12%
-47
* C7 *
3C1Y
1
DISA_THEMA
A:
[27-375]
VP
Q
E
L
I
E
K
I
K
L
I
SPGT
E
L
R
K
A
L
D
D
I
I
N
A
N
F
G
A
L
I
---
F
L
V
-
D
D
P
K
K
YEDVIQGG
F
----
W
L
D
T
D
F
S
A
E
K
L
Y
E
-
L
S
K
M
D
G
----------------
A
I
V
L
S
E
DI
T
K
I
----------
Y
Y
A
N
V
H
L
V
P
DPTIPTGETG
T
R
H
R
T
A
E
R
L
A
K
Q
--
T
G
K
V
V
I
A
V
S
R
R
R
N
I
I
S
L
Y
Y
K
N
Y
K
----------
Y
V
-----
V
N
Q
V
D
-----------
F
-
L
I
S
K
V
T
Q
A
I
--
S
T
L
E
K
Y
K
D
N
F
N
---------
K
L
L
S
E
-
L
E
V
L
E
L
E
NRVT----
L
A
D
V
V
R
------
T
L
---
A
K
G
--------
F
E
L
L
R
I
-----
V
E
E
I
R
P
Y
I
V
E
L
G
E
E
G
R
L
A
R
------
M
Q
L
--------
R
E
L
T
E
D
V
D
--
D
L
L
V
---------
L
L
I
M
D
Y
S
S
E
--------------
E
-
V
---------
E
E
E
T
A
Q
N
I
L
Q
D
F
I
--
T
R
--
R
-
E
P
S
P
I
S
I
-----
S
-
R
V
L
G
Y
D
-
V
Q
Q
A
A
Q
L
D
--
D
-----
V
-----
L
V
S
A
R
G
Y
R
--
L
L
K
T
V
A
--------
R
I
P
L
S
I
G
-------
Y
N
V
-----
V
R
M
FK
T
L
D
Q
I
S
K
A
S
V
E
D
L
K
K
V
E
GIG
E
K
R
A
R
A
I
S
E
S
I
S
S
L
K
H
R
KT--------------
22
Fugue
67.44
13%
-64
- C7 -
3HUF
2
NBS1_SCHPO
A:
[1-320]
------------------
M
W
I
I
E
A
E
G
D
I
L
K
G
K
S
R
---
I
L
F
-
P
G
T
Y
I
--------
V
GRNV
S
D
D
S
S
H
I
Q
V
I
S
K
S
-
I
--
S
K
R
----------------
H
A
R
F
T
I
--
L
T
P
----------
S
E
K
D
Y
F
T
G
G
-------------
P
C
E
F
E
V
K
D
L
DT
K
F
--
G
T
K
V
N
E
K
V
V
G
Q
N
G
D
S
Y
K
E
K
----------
D
L
-----
K
I
Q
L
G
-----------
K
-
C
P
F
T
I
N
A
Y
W
-----
R
S
M
C
I
Q
F
D
---------
N
P
E
M
L
-
S
Q
W
A
S
N
---------
L
N
L
L
G
I
------
P
T
---
G
L
R
DSDATT
H
F
V
M
N
R
Q
A
-----
G
--
S
S
I
T
V
G
T
M
Y
A
F
L
K
-
K
T
------
V
I
I
--------
D
D
S
Y
L
Q
Y
L
--
S
T
V
K
ESVIEDASL
M
P
D
A
L
E
C
F
K
--------------
N
-
I
I
KNNDQFPS
S
P
E
D
C
I
N
S
L
E
G
F
S
C
A
M
L
--
N
-
T
S
S
E
S
H
H
-----
L
-
L
E
L
L
G
---
L
R
I
S
T
F
M
--
K
-----
E
-----
L
I
S
K
T
D
F
V
--
V
L
N
G
I
F
--------
C
L
T
I
E
Q
L
-------
W
K
I
-----
I
I
E
--
R
N
S
R
E
L
I
S
K
E
I
E
R
L
K
Y
A
------------------------------------
9
HHSearch
65.00
13%
-6
- C9 -
2EQJ
-
MTF2_MOUSE
A:
[13-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
E
-
E
G
Q
D
V
L
A
R
W
S
D
-----
G
L
F
Y
--
L
G
T
I
K
K
I
N
--
I
L
K
Q
S
C
--------
F
I
I
F
E
D
S
-------
S
-
K
-----
S
W
V
--
L
W
K
D
I
Q
T
G
---------------------------------------------
10
HHSearch
61.25
28%
-87
- C8 -
3AF5
-
?
A:
[19-74]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
----------
A
V
-----
V
N
Q
M
V
-----------
P
K
E
A
K
I
T
E
I
E
F
----
E
G
P
E
L
V
I
Y
V
---------
K
N
P
E
-----
G
E
L
---------
I
K
D
L
A
K
------
V
L
---
K
K
R
--------
I
S
V
R
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
58.64
14%
-14
- C9 -
2E5Q
-
PHF19_HUMAN
A:
[8-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
-
E
G
Q
Y
V
L
C
R
W
T
D
-----
G
L
Y
Y
--
L
G
K
I
K
R
V
S
--
S
S
K
Q
S
C
--------
L
V
T
F
E
D
N
-------
S
-
K
-----
Y
W
V
--
L
W
K
D
I
Q
H
A
G
V
P
------------------------------------------
11
HHSearch
56.23
19%
-87
* C6 *
2D7E
-
PRIA_ECOLI
A:
[13-67]
------------------------------
P
R
T
F
---
D
Y
L
L
P
E
G
M
T
--------
V
----
K
A
G
C
R
V
R
V
P
F
G
K
Q
Q
E
--
R
I
G
----------------
I
V
V
S
V
S
--
D
A
S
----------
E
--
L
P
L
N
E
L
-------------
K
A
V
V
E
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
55.92
23%
2
- C9 -
2E70
-
SPT5H_HUMAN
A:
[704-755]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
-
I
G
Q
T
V
R
I
S
--
Q
-----
G
PYKG
Y
I
G
V
V
K
D
A
T
----
E
S
T
A
--------
R
V
E
L
H
S
T
-------
C
Q
T
-----
I
S
V
--
D
R
Q
R
L
T
T
V
G
S
-------------------------------------------
12
HHSearch
55.21
24%
-36
- C8 -
2YCB
-
?
A:
[20-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
Q
V
A
K
V
E
F
----
E
G
P
E
V
V
I
Y
T
---------
K
N
P
E
I
I
T
E
N
G
N
L
---------
I
R
D
I
A
K
------
D
I
---
R
K
R
--------
I
I
I
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
54.31
17%
-29
- C8 -
1SV0
-
POK_DROME
A:
[66-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
V
R
E
F
D
L
--------------
P
K
L
---------
D
F
D
L
F
-
Q
M
N
G
K
R
L
C
L
L
T
--
R
-
A
-----
D
-----
F
-
G
H
R
C
P
G
-
A
G
D
V
L
H
------------------------------------------------------------------------------------------------------------------------
6
HHSearch
53.25
29%
23
- C9 -
2XDP
1
A:
[64-113]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
A
-
E
G
E
V
V
Q
V
K
W
P
D
-----
G
K
L
Y
--
G
A
K
Y
F
G
S
N
---
I
A
H
M
Y
--------
Q
V
E
F
E
D
G
-------
S
-
Q
-----
I
A
M
--
K
R
E
D
I
Y
T
----------------------------------------------
18
HHSearch
51.24
15%
14
- C8 -
1X66
-
A:
[40-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
E
Y
S
L
--------------
M
E
I
---------
D
T
S
F
F
Q
N
M
D
G
K
E
L
C
K
M
N
--
K
-
E
-----
D
-----
F
-
L
R
A
T
T
L
Y
N
T
E
V
L
L
------------------------------------------------------------------------------------------------------------------------
14
HHSearch
50.78
14%
-20
* C9 *
2G3R
1
A:
[23-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
K
I
T
R
D
V
G
A
G
K
Y
K
L
L
--
F
-
D
D
G
Y
E
C
D
V
L
GKD
I
L
L
C
D
P
I
P
-
L
D
T
E
V
T
A
L
--
S
EDE
Y
F
S
-----
A
G
V
V
K
G
H
R
K
E
S
G
E
L
Y
Y
--------
S
I
E
-
K
E
G
-------
Q
-
R
-----
K
W
Y
--
K
R
M
A
V
I
-----------------------------------------------
16
HHSearch
47.42
15%
-17
- C8 -
1JI7
1
ETV6_HUMAN
A:
[27-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
N
E
F
S
L
--------------
R
P
I
---------
D
S
N
T
F
-
E
M
N
G
K
A
L
L
L
L
T
--
K
-
E
-----
D
-----
F
-
R
Y
R
S
P
H
-
S
G
D
E
L
Y
------------------------------------------------------------------------------------------------------------------------
1
HHSearch
47.06
15%
-2
- C9 -
2MAM
-
ARI4A_HUMAN
A:
[15-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
Y
R
G
---------------
A
-
F
---------
C
E
A
K
I
K
T
V
K
R
L
V
K
V
K
V
L
--
L
-
K
Q
D
N
T
T
Q
L
V
Q
DD
Q
-
V
K
G
P
L
R
-
V
G
A
I
V
E
T
R
--
T
SD---
G
SF
Q
--
E
A
I
I
S
K
L
T
--
D
-
A
S
W
Y
--------
T
V
V
F
D
D
G
-------
D
-
E
-----
R
T
L
--
R
R
T
S
L
C
L
----------------------------------------------
5
HHSearch
45.45
18%
19
- C9 -
3S6W
2
A:
[20-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
E
V
E
A
L
----
S
G
M
T
A
--------
V
V
K
F
I
D
Y
-------
G
N
Y
-----
E
E
V
--
L
L
S
N
I
K
P
----------------------------------------------
2
HHSearch
45.27
10%
-7
- C9 -
4HCZ
1
PHF1_HUMAN
A:
[4-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
-
E
G
Q
D
V
L
A
R
W
T
D
-----
G
L
L
Y
--
L
G
T
I
K
K
V
D
--
S
A
R
E
V
C
--------
L
V
Q
F
E
D
D
-------
S
-
Q
-----
F
L
V
--
L
W
K
D
I
S
P
A
A
L
P
------------------------------------------
3
HHSearch
43.98
10%
-25
- C9 -
2XK0
-
A:
[21-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
A
-
L
Q
E
D
V
F
I
K
C
N
D
-----
G
R
F
Y
--
L
G
T
I
I
D
Q
----
T
S
D
Q
Y
--------
L
I
R
F
D
D
Q
-------
S
-
E
-----
Q
W
C
--
E
P
D
K
L
R
K
L
G
G
G
S
-----------------------------------------
23
Fugue
43.25
29%
66
- C6 -
1IW4
-
ITRP_HALRO
A:
[1-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
------
M
D
C
TEFNPLCR
C
N
K
M
L
G
D
L
--
I
C
A
V
---------
I
G
D
A
K
E
E
H
R
--------------
N
------------------
M
C
A
--
L
C
C
E
H
--
P
-
G
G
F
E
Y
S
N
-----
G
-
P
C
E
----------------------------------------------------------------------------------------------------------------------------------