@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 687_tVI_BRADI: (2014-05-13 )
EGCDNDRQDMIRECAKYQKFPKEPKKDPSKACCAVWQKADFPCLCKDVTKELEKVAYVAKFCKWPFPSGYKCGSYTFPLGQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........--.10........20----..----..---.------.------..-------30........--40---------.----------.---..----------...-----.------.--------50---------------.-------------------.-----.-......60...-...----..70..---......80--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGCDN
D
R
Q
--
D
M
I
R
E
C
A
K
Y
Q
KFP----KE----PK---K------
D
------
P
S
-------
K
A
C
C
A
V
W
QKA--D----------F----------
P
---
C
L
----------
C
K
D
-----
V
------
T
--------
K
----------------
E
-------------------
L
-----
E
-
K
V
A
Y
V
A
K
FCKW-PFP----SGYKCG---
S
Y
TFPLGQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
73.96
28%
-43
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
-
Q
--
D
E
L
N
E
C
K
P
A
V
S
K
E
----
N
P
----
T
S
-----------------
P
S
-------
Q
P
C
C
T
A
L
Q
H
A
--
D
----------
F
----------
A
---
C
L
----------
C
G
Y
-----
K
------
N
--------
S
----------------
P
-------------------
W
-----
L
-
G
S
F
G
V
D
P
E
L
A
S
-
A
L
P
----
K
Q
--
C
G
---
L
A
N
A
P
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
69.79
21%
-44
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
T
S
--
N
L
-
A
P
C
L
A
Y
L
R
N
T
-----
G
-----------------------
P
L
-------
G
R
C
C
G
G
V
K
A
L
--
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
---
C
T
----------
C
L
K
S
A
A
G
A
I
S-----
G
--------
I
----------------
N
-------------------
L
-----
G
-
K
A
A
G
L
P
S
T
C
G
V
-
N
I
P
YKIS
P
S
T
D
C
S
---
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
68.71
28%
-48
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
--
E
L
-
N
E
C
K
P
A
V
S
K
-----
E
N
----
P
----
T
------
S
------
P
S
-------
Q
P
C
C
T
A
L
Q
H
A
--
D
----------
F
----------
A
---
C
L
----------
C
G
Y
-----
K
------
N
SP
W
L
G
S
F
G
V
----------------
D
-------------------
P
-----
E
-
L
A
S
A
L
P
K
Q
C
G
L
-
A
N
A
----
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
67.41
17%
-65
- C3 -
2LVF
-
?
A:
[7-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
R
E
Q
M
Q
R
Q
Q
M
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
S
T
Y
----
Q
T
---
M
------
P
RRGMEP
H
M
-------
S
E
C
C
E
Q
L
E
G
M
--
D
----------
E
----------
S
---
C
R
----------
C
E
G
-----
L
------
R
--------
M
----------------
M
M
R
M
M
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
M
-----
R
-
L
A
E
N
I
P
S
R
C
N
L
-
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
67.26
26%
-170
- C3 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-------
D
D
C
C
A
L
I
G
G
L
G-
D
----------
I
----------
E
A
I
V
C
L
----------
C
I
Q
-----
L
------
R
--------
A
L
GIL------------
N
-------------------
L
-----
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
Y
P
----
S
N
A
T
C
P
---
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
65.45
19%
-33
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
G
H
V
D
S
--
L
V
-
R
P
C
L
S
Y
V
Q
G
------
G
---------
P
------
G
------
P
S
-------
G
Q
C
C
D
G
V
K
N
L
--
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
---
C
N
----------
C
L
K
-----
G
------
I
A
R
G
IHN--
L
----------------
N
-------------------
E
-----
D
-
N
A
R
S
I
P
P
K
C
G
V
-
N
L
P
Y
T
I
S
L
N
I
D
C
S
---
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
65.33
12%
-101
- C5 -
1EHX
-
?
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
Q
D
----
P
T
---
I
------
N
------
P
T
-------
S
I
S
A
K
A
G
S
F
A
--
D
----------
T
----------
K
---
I
T
L
T
PNG
N
T
F
N
G
I
S
E
-----
L
------
Q
--------
S
----------------
S
-------------------
Q
Y
T
K
G
T
N
-
E
V
T
L
L
A
S
Y
L
N
T
--
L
P
----
E
N
T
T
K
----
T
L
T
F
D
F
G
V
GTKNPKLT
I
T
V
L
PKDIPGLE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
62.06
19%
-103
* C3 *
1S6D
-
2SS8_HELAN
A:
[10-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
M
Y
L
M
K
N
----
L
G
ERS-
Q
V
---
S
PR
M
R
E
E
D
------
H
K
-------
Q
L
C
C
M
Q
L
K
N
L
--
D
----------
E
----------
K
---
C
M
----------
C
P
A
-----
I
------
M
--------
M
M
L
N
EPMWIR-------
M
R
D
Q
V
---------------
M
-----
S
-
M
A
H
N
L
P
I
E
C
N
L
-
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
61.05
17%
-56
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
S
S
--
S
L
-
A
P
C
I
P
Y
V
R
G
G
---------------
G
------
A
------
V
P
-------
P
A
C
C
N
G
I
R
N
V
--
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
---
C
N
----------
C
L
K
-----
Q
L
S
A
S
VP
G
--------
V
----------------
N
-------------------
P
-----
N
-
N
A
A
A
L
P
G
K
C
G
V
-
S
I
P
YKIS
A
S
T
N
C
A
---
T
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
59.10
19%
-85
- C3 -
1N89
1
NLT2G_WHEAT
A:
[7-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
C
A
S
A
I
L
S
G
---------------
A
------
K
------
P
S
-------
G
E
C
C
G
N
L
R
A
Q
--
Q
---------------------
G
---
C
F
----------
C
Q
Y
-----
A
------
K
DPTY
G
Q
Y
-
I
----------------
R
-------------------
S
-----
P
-
H
A
R
D
T
L
T
S
C
G
L
-
A
V
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
58.77
20%
-31
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
G
Q
V
A
S
--
A
I
-
A
P
C
I
S
Y
A
R
G
-----
Q
G
----
S
-----------
G
------
P
S
-------
A
G
C
C
S
G
V
R
S
L
--
N
----------
N
A
A
RT
T
A
D
R
R
A
A
---
C
N
----------
C
L
K
N
A
A
A
G
V
S-----
G
--------
L
----------------
N
-------------------
A
-----
G
-
N
A
A
S
I
P
S
K
C
G
V
-
S
I
P
Y
T
I
S
T
S
T
D
C
S
---
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
55.74
14%
-43
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
G
Q
V
Q
G
--
N
L
-
A
Q
C
I
G
F
L
Q
K
G
---------------
G
------
V
------
V
P
-------
P
S
C
C
T
G
V
K
N
I
--
L
----------
N
SSRTTADR
R
A
V
---
C
S
----------
C
L
K
-----
A
A
A
G
A
VR
G
--------
I
----------------
N
-------------------
P
-----
N
-
N
A
E
A
L
P
G
K
C
G
V
-
N
I
P
YKIS
T
S
T
N
C
N
---
S
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
54.70
18%
-27
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
A
G
Q
-----
L
T
V
C
T
G
A
I
A
------------
G
G
---
A
------
R
------
P
T
-------
A
A
C
C
S
S
L
R
A
Q
--
Q
---------------------
G
---
C
F
----------
C
Q
F
-----
A
------
K
--------
D
----------------
P
-------------------
R
-----
Y
-
G
R
Y
V
N
S
P
N
A
R
K
-
A
V
S
----
S
---
C
G
----
I
A
L
P
T
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
54.69
13%
-66
- C3 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
E
R
Q
V
D
R
-
V
N
L
K
P
C
E
Q
H
I
M
Q
R
----
I
M
GEQE
Q
Y
DSY
D
------
I
------
R
S
TR
S
S
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
EN
T
----------
Q
----------
G
---
C
M
----------
C
E
A
-----
L
------
Q
--------
Q
I
M
E
N
Q
CDRLQDRQMV
Q
Q
-------------------
F
-----
K
R
E
L
M
S
L
P
Q
Q
C
N
F
-
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
48.74
26%
-4
- C2 -
1MIU
-
DSS1_HUMAN
B:
[7-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
D
L
--
G
L
L
E
E
D
D
E
F
E
E
F
P
----
A
E
----
H
V
---
W
------
E
------
D
N
-------------
W
D
D
D
--
D
----------
F
----------
S
----------------
N
Q
-----
L
------
R
--------
A
----------------
E
-------------------
L
-----
E
-
K
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
47.34
23%
40
- C3 -
3WAI
-
MALE_ECOLI
A:
[3-739]
G
M
K
I
E
EG
K
L
V
I
W
I
N
GDKG
Y
N
G
L
A
E
V
G
K
K
F
E
K
D
TG
I
K
V
T
V
E
H
P
DK
L
E
E
K
F
P
Q
V
A
ATGDGPD
I
I
F
W
AH
D
R
F
G
G
Y
A
Q
S
GLL
A
E
I
T
P
D
K
A
F
Q
D
K
L
Y
P
F
T
W
D
A
V
RYNGKLI
A
Y
P
I
A
V
E
A
L
S
L
I
Y
N
KDLLPNPPKTWEE
I
P
A
L
D
K
E
L
K
A
K
GKSA
L
M
F
NLQEPYFT
W
P
L
I
A
ADGGYAFKDVGVDN
A
G
A
K
A
G
L
T
F
L
V
D
L
I
K
N
KHMNADTD
Y
S
I
A
E
A
A
F
N
K
GETA
M
T
I
N
G
PWA
W
S
N
I
D
T
S
KVN
Y
G
V
T
V
L
P
T
F
KG
Q
P
S
K
P
FVGVL
S
A
G
I
N
AASPN
K
E
L
A
K
E
F
L
E
NYLLT
D
E
G
L
E
A
V
N
K
D
KPLGAVAL
K
S
Y
E
E
E
L
AKD
P
R
I
A
A
T
M
E
N
A
Q
K
GEIMPN
I
P
Q
M
S
A
F
W
Y
A
V
R
T
A
V
I
N
A
A
S
GRQT
V
D
E
A
L
K
D
A
Q
T
N
K
Q
W
Y
D
A
L
T
W
M
R
E
--
N
T
-
P
D
G
E
K
Y
D
E
Y
P
----
F
E
----
T
Y
---
G
------
V
------
I
S
-------
W
--------------------------------------------------
W
D
-----
Y
------
G
--------
H
----------------
W
-------------------
I
-----
E
-
A
V
A
H
-----
R
M
-
P
I
A
----
N
P
F
Q
A
G
IGN
K
Y
N
N
V
P
G
A
S
S
F
F
T
AEN
E
S
Y
A
E
F
V
A
E
K
L
NVK
Y
V
V
S
D
IEMETGK
Y
Y
A
M
A
V
W
A
E
GDLPLAEKY
Y
G
G
Y
F
Y
Y
S
PTG
T
F
G
Y
A
NSQWDIPLNSIIIP
L
R
I
P
S
E
L
Y
Y
S
T
M
E
A
K
L
HLFDGSGLSHYRMIYESDYP
A
E
W
K
S
Y
S
S
Q
VNLNN
E
S
Q
V
L
Q
T
A
L
Y
E
A
V
M
R
A
R
Y
GVSPT
M
G
T
Q
E
V
L
Y
K
Y
A
Y
T
Q
LYEKKMG
I
P
V
K
IAPSGY
V
K
I
F
E
R
V
K
G
A
V
V
T
G
K
V
SANVT
E
V
S
V
N
A
T
I
K
T
NQN
R
T
F
E
Y
W
Q
T
V
E
V
K
NG
T
Y
T
V
V
L
PYSHNSDYPVKPIT
P
Y
H
I
K
AGN
V
V
K
E
I
T
I
Y
E
S
Q
V
Q
N
G
E
I
I
Q
L
D
L
15
HHSearch
45.90
18%
-37
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[8-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
V
C
T
G
A
I
A
G
G
---------------
A
------
R
------
P
T
-------
A
A
C
C
S
S
L
R
A
Q
-------------
Q
----------
G
---
C
F
----------
C
Q
F
-----
A
------
K
D-------
P
RYGRYV----------
N
-------------------
S
-----
P
-
N
A
R
K
A
V
S
S
C
G
I
-
A
L
P
-------
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
39.40
6%
-88
- C3 -
1HCR
-
A:
[1-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
----
R
P
----
R
A
---
I
------
N
------
K
H
E
Q
-----
E
Q
I
S
R
L
L
E
-
K
--
G
----------
H
----------
P
---------------
R
Q
Q
-----
L
------
A
--------
I
----------------
I
-------------------
F
-----
G
---
I
G
V
S
T
L
Y
R
Y
F
P
A
S
----
S
I
K
K
R
M
---
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
33.51
18%
-46
- C4 -
2A41
-
WIPF1_HUMAN
C:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
A
G
R
N
--
A
L
L
S
D
I
S
K
G
K
K
L
K
----
K
T
----
V
T
---
N
------
D
------
R
S
-------
A
P
I
L
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
31.28
9%
2
* C5 *
1JMX
-
?
A:
[282-363]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
K
A
R
L
L
AVQPAFIK
A
G
G
E
S
E
I
T
---
L
V
G
-----
S
G
L
A
----
G
K
----
P
D
---
L
------
G
------
A
G
-------
V
E
V
T
E
V
L
E
Q
T
--
P
--------------------------------------------------------------------------------------------------------
T
-
L
V
R
L
K
A
R
------
A
A
----
A
D
A
K
P
G
---
Q
R
E
V
A
V
G
T
LKG
V
N
L
A
V
Y
D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
EGCDN
D
R
Q
D
M
I
R
E
C
A
K
Y
Q
KFPKEPKK
D
P
S
K
A
C
C
A
V
W
QKADF
P
C
L
C
K
D
V
T
K
E
L
E
K
V
A
Y
V
A
K
FCKWPFPSGYKCG
S
Y
TFPLGQ
39
85.75
100%
-78
- C- -
M039
-
A:
[1-142]
E
G
C
D
N
D
R
Q
D
M
I
R
E
C
A
K
Y
Q
K
F
P
K
E
P
K
K
D
P
S
K
A
C
C
A
V
W
Q
K
A
D
F
P
C
L
C
K
D
V
T
K
E
L
E
K
V
A
Y
V
A
K
F
C
K
W
P
F
P
S
G
Y
K
C
G
S
Y
T
F
P
L
G
Q
37
48.54
100%
16
- C- -
M037
-
A:
[2-155]
E
G
C
D
N
D
R
Q
D
M
I
R
E
C
A
K
Y
Q
K
F
P
K
E
P
K
K
D
P
S
K
A
C
C
A
V
W
Q
K
A
D
F
P
C
L
C
K
D
V
T
K
E
L
E
K
V
A
Y
V
A
K
F
C
K
W
P
F
P
S
G
Y
K
C
G
S
Y
T
F
P
L
G
Q
38
41.52
100%
30
- C- -
M038
-
A:
[2-155]
E
G
C
D
N
D
R
Q
D
M
I
R
E
C
A
K
Y
Q
K
F
P
K
E
P
K
K
D
P
S
K
A
C
C
A
V
W
Q
K
A
D
F
P
C
L
C
K
D
V
T
K
E
L
E
K
V
A
Y
V
A
K
F
C
K
W
P
F
P
S
G
Y
K
C
G
S
Y
T
F
P
L
G
Q