@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0096: (2015-11-28 )
MFLALPALFLWLLNWTLVKEIWRFNDLMQEAPEEERQLIIYRLVDTLPFITQTTYDLSAVASVNLSVNKLIEKYGENLSKDGFYTQLNRENTTNIEGYIKQSNEFKAEEKSHALKCLGFINRIEDKFQDNCSKLTLKQADILY
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-.....10.....-----...20........30--..--......40.-------......-.50.--.......60........70--........80--.----.......-----------90--------........100....-...110.......120.......130.......140.----------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFL
A
-
L
P
A
L
F
L
W
L
L
N
W
T
-----
L
V
K
E
I
W
R
F
N
D
L
M
Q
EA--
P
E
--
E
E
R
Q
L
I
I
Y
R
-------
L
V
DTLP-FITQ--TTYDLS
A
V
A
S
VN
L
S
V
N
K
L
I
--
E
K
YGENLSKD--G----
F
Y
T
QLNR-----------EN--------TTN
I
E
G
Y
I
KQSNEFK-
A
E
E
K
S
H
A
L
K
C
L
G
F
I
N
R
I
E
D
K
F
Q
D
N
C
S
K
L
T
LKQADILY----------------------------------------------------------------------------------------------------
43
Fugue
81.98
21%
-55
- C3 -
5A61
6
?
A:
[2-430]
A
M
A
Q
E
I
E
L
K
F
I
V
NHSA
V
E
A
L
R
D
H
L
N
T
LGGEHH
D
P
V
Q
L
L
N
I
Y
Y
E
T
PDN
W
L
R
G
H
D
M
G
L
R
I
R
G
E
NG
R
Y
E
M
T
M
K
V
A
G
R
V
T
GG
L
H
Q
R
P
E
Y
N
V
A
L
SEPTLDLAQLPTEVWPNGELPADLASRVQPL
F
S
T
D
F
Y
R
E
K
W
L
V
A
V
DD
S
R
I
E
I
A
L
D
Q
G
E
V
K
A
GE
F
A
E
P
I
C
E
L
E
L
E
L
LSGD
T
R
A
V
L
K
L
A
N
Q
L
V
SQTG
L
R
Q
G
SLS
K
A
A
R
G
Y
H
L
A
Q
GN
P
A
R
E
I
K
P
T
T
I
L
H
V
A
AKAD
V
E
Q
G
L
E
A
A
F
E
L
A
L
A
Q
W
Q
Y
H
E
E
L
W
V
R
GNDAA
K
E
Q
V
L
A
A
I
G
L
V
-
R
H
A
L
M
L
------------------
F
G
G
I
V
-----
P
R
--
K
A
S
T
H
L
R
D
L
-------
L
T
Q
C
E
A
-
T
I
A
S
--
A
V
S
A
V
T
A
V
Y
S
T
E
T
A
M
A
K
L
----
A
L
T
E
W
L
V
S
K
--
A
----
W
Q
P
F
L
D
A
-----------
K
A
--------
Q
G
K
I
S
D
S
F
K
R
F
A
D
I
H
-
L
S
R
H
A
A
E
L
K
S
V
-
F
C
Q
P
L
G
D
R
Y
H
D
Q
L
P
R
L
T
R
D
I
D
S
I
L
L
L
AGYYD
P
V
V
A
Q
A
W
L
E
N
W
Q
G
L
R
H
A
I
A
T
GQ
R
I
E
I
E
H
F
R
N
E
A
N
N
QEPFWL-----------------------------------------------------
4
PsiBlast_PDB
70.12
27%
-33
- C4 -
4NNO
1
?
A:
[205-291]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
E
I
N
T
E
K
Q
G
T
--
P
E
--
Q
M
R
Q
A
I
E
F
V
-------
K
K
H
K
L
K
H
L
L
V
E
--
T
S
V
D
K
K
A
M
E
S
L
S
E
E
T
K
K
D
I
F
G
E
V
Y
T
D
S
I
G
K
E
--
G
TKGD
S
Y
Y
K
M
M
K
-----------
S
N
--------
I
E
T
V
H
G
S
M
K
------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
66.37
30%
19
- C4 -
2CSX
-
SYM_AQUAE
A:
[373-420]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
D
--
E
----
E
Y
A
K
I
A
Q
-----------
E
S
--------
I
K
N
Y
E
N
Y
M
E
K
V
N
F
Y
K
-
A
I
E
E
--
I
L
K
F
T
S
Y
L
N
K
Y
V
D
E
K
Q
P
W
A
L
N
K
E
R
K
K
E
E
L
Q
K
----------------------------------------------------------------------------------------------------
41
Fugue
64.99
15%
-39
- C1 -
1K8W
11
TRUB_ECOLI
A:
[22-324]
-----------------------------------------------------------------------------------------------------------------------------------------------------M
D
I
N
G
V
L
LLDKPQGMS
S
N
D
A
L
Q
K
V
K
R
I
Y
NAN
R
A
G
H
T
G
A
L
D
PLAT
G
M
L
P
I
C
L
G
EATKFS
Q
Y
L
L
D
S
D
K
R
Y
R
V
I
A
R
L
G
Q
R
T
DTSDADGQIV
E
E
R
P
V
T
F
S
A
E
Q
L
A
A
A
L
D
T
F
R
G
D
I
E
Q
-
I
P
S
M
Y
S
A
L
--
K
Y
-----
Q
G
K
K
L
Y
E
Y
A
R
Q
G
I
E
V
--
P
R
--
E
A
R
P
I
T
V
Y
E
-------
L
--
L
F
I
-
R
H
E
G
--
N
E
L
E
L
E
I
H
C
S
K
G
T
Y
I
R
T
I
I
--
D
D
L
G
E
K
L
G
C
G
--
A
----
H
V
I
Y
L
R
R
-----------
L
A
VSKYPVER
M
V
T
L
E
H
L
R
E
L
V
E
Q
A
E
-
Q
Q
D
I
P
A
A
E
L
L
D
P
L
L
M
P
M
D
S
P
A
S
D
Y
-
P
V
V
N
L
P
L
T
S
S
V
Y
F
K
N
G
N
P
V
R
T
SGAPLE
G
L
V
R
V
T
E
G
ENGKFI
G
M
G
E
I
D
DEG
R
V
A
P
R
R
LVVE----------------------------------------------------
5
PsiBlast_PDB
62.39
27%
-1
- C4 -
4NNP
-
?
A:
[205-291]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
E
I
N
T
E
K
Q
G
T
--
P
E
--
Q
M
R
Q
A
I
E
F
V
-------
K
K
H
K
L
K
H
L
L
V
E
--
T
S
V
D
K
K
A
M
E
S
L
S
E
E
----
I
F
G
E
V
Y
T
D
S
I
G
K
E
--
G
TKGD
S
Y
Y
K
M
M
K
-----------
S
N
--------
I
E
T
V
H
G
S
M
K
------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
60.82
30%
25
- C4 -
2CT8
-
SYM_AQUAE
A:
[373-420]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
D
--
E
----
E
Y
A
K
I
A
Q
-----------
E
S
--------
I
K
N
Y
E
N
Y
M
E
K
V
N
F
Y
K
-
A
I
E
E
--
I
L
K
F
T
S
Y
L
N
K
Y
V
D
E
K
Q
P
W
A
L
N
K
E
R
K
K
E
E
L
Q
K
----------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.19
27%
5
- C4 -
4K3V
1
?
A:
[223-308]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
E
I
N
T
E
K
Q
G
T
--
P
E
--
Q
M
R
Q
A
I
E
F
V
-------
K
K
H
K
L
K
H
L
L
V
E
--
T
------------------G-
E
V
Y
T
D
S
I
G
K
E
--
G
TKGD
S
Y
Y
K
M
M
K
-----------
S
N
--------
I
E
T
V
H
G
S
M
-------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
58.00
13%
-43
* C3 *
4PX7
2
?
A:
[1-258]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR
S
I
A
R
R
T
A
V
G
A
A
L
L
L
V
M
P
V
A
V
W
I
S
G
W
R
W
Q
P
GSW
L
L
K
A
A
F
W
V
T
E
T
V
T
Q
P
W
--
G
V
--
I
T
H
L
I
L
F
G
W
-------
F
L
W
C
L
R
-
F
R
I
K
--
A
A
F
V
L
F
A
I
L
A
A
A
I
L
V
G
Q
G
V
--
K
S
W
I
K
D
K
V
Q
E
PR
P
----
F
V
I
W
L
E
K
-----------
T
H
----------------------
H
M
P
V
D
K
F
Y
T
L
K
R
A
E
R
G
N
L
V
K
E
Q
L
A
E
P
Q
Y
L
R
S
H
W
Q
K
E
T
G
F
AFPS
G
H
T
M
F
A
A
S
W
A
L
L
A
V
G
LLWPRRRT
L
T
I
A
I
L
L
V
W
A
T
G
V
M
G
S
R
L
L
L
GMHW
P
R
D
L
V
V
A
T
L
I
S
W
A
L
V
A
V
A
T
W
L
A
Q
R
I
CGPLTPPE
E
N
R
E
I
A
Q
R
E
Q
E
S
L
EHH
12
PsiBlast_PDB
55.36
31%
-72
- C4 -
4GIP
1
FUS_SV5
A:
[6-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
Q
I
G
VI
P
T
--
N
V
R
Q
L
M
Y
Y
T
E
A
S
S
A
F
I
V
V
K
L
M
P
-
T
I
D
S
PI
S
G
C
N
I
T
S
I
S
S
Y
N
A
T
V
T
K
L
L
--
Q
P
I
G
E
N
L
E
T
I
--
R
----
N
Q
L
I
P
T
R
-----------
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
54.32
16%
23
- C5 -
1KWI
-
PG3_PIG
A:
[31-128]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
S
Y
R
E
A
V
L
R
A
V
--
D
R
L
N
E
Q
S
S
E
A
--
N
----
L
Y
R
L
L
E
L
DG
T
P
K
P
V
S
F
T
V
K
E
--------
T
V
C
P
R
P
T
R
Q
P
P
E
L
C
D
-
F
K
E
N
G
R
V
K
Q
C
V
G
T
V
T
L
--
D
P
L
D
I
T
C
N
E
V
Q
------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
53.67
30%
-87
- C4 -
2B9B
2
?
A:
[13-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
--
N
V
R
Q
L
M
Y
Y
T
E
A
S
S
A
F
I
V
V
K
L
M
P
-
T
I
D
S
PI
S
G
C
N
I
T
S
I
S
S
Y
N
A
T
V
T
K
L
L
--
Q
P
I
G
E
N
L
E
T
I
--
R
----
N
Q
L
I
P
T
R
-----------
R
R
--------
F
A
G
V
V
I
G
L
A
A
L
G
V
A
T
-
A
A
Q
V
T
A
A
V
A
L
V
K
A
N
E
N
A
A
A
I
L
N
L
K
N
A
I
Q
K
T
N
A
A
V
A
D
V
----------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
50.90
30%
-79
- C4 -
4WSG
1
?
A:
[13-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
--
N
V
R
Q
L
M
Y
Y
T
EASS
A
F
I
V
V
K
L
M
P
-
T
I
D
S
P
I
S
G
C
N
I
T
S
I
S
S
Y
N
A
T
V
T
K
L
L
--
Q
P
I
G
E
N
L
E
T
I
--
R
----
N
Q
L
I
P
T
R
-----------
R
R
--------
F
A
G
V
V
I
G
L
A
A
L
G
V
A
T
-
A
A
Q
V
T
A
A
V
A
L
V
K
A
N
E
N
A
A
A
I
L
N
L
K
N
A
I
Q
K
T
N
A
A
V
A
D
V
----------------------------------------------------------------------------------------------------
26
HHSearch
49.57
19%
-93
* C4 *
3HJL
-
FLIG_AQUAE
A:
[143-189]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
A
E
I
I
Q
N
L
--
P
E
--
E
L
K
K
E
V
V
K
R
-------
I
A
-------
T
L
--
E
N
V
N
V
Q
Y
V
K
E
L
A
Q
I
L
L
E
E
I
--
S
S
L
G
A
K
E
A
L
K
--
L
----
E
G
T
A
V
A
A
-----------
E
L
--------
L
N
T
L
D
K
E
T
R
E
L
I
L
Q
S
-
I
G
Q
E
D
P
L
L
E
E
R
I
R
E
K
M
F
T
F
E
D
I
R
K
L
S
D
R
D
I
I
E
I
L
K
V
V
----------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
49.10
25%
28
- C4 -
3JSL
1
DNLJ_STAAU
A:
[237-298]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
L
D
K
L
--
G
----
F
T
T
N
K
N
R
-----------
A
R
--------
V
N
N
I
D
G
V
L
E
Y
I
E
K
W
T
-
S
Q
R
E
S
L
P
Y
D
I
D
G
I
V
I
K
V
N
D
L
D
Q
Q
D
E
M
G
F
T
Q
K
S
P
R
W
A
I
----------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
47.99
30%
11
- C4 -
5CPC
-
?
A:
[30-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--------
A
I
H
M
G
G
W
D
K
V
Q
D
H
F
R
-
A
E
K
K
D
H
A
L
E
V
L
H
S
I
I
H
G
E
M
E
V
N
V
E
D
I
N
K
I
Y
A
F
K
R
L
Q
H
----------------------------------------------------------------------------------------------------
21
HHSearch
45.26
20%
-13
- C4 -
3G80
-
B2_NODAM
A:
[8-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
L
I
K
S
L
--
P
A
K
L
E
Q
L
A
Q
E
T
Q
A
-------
T
I
Q
T
L
M
---
I
A
-----
D
P
N
V
N
--------
K
D
L
--
R
A
F
C
E
F
L
T
V
Q
--
H
----
Q
R
A
Y
R
A
T
-----------
N
S
--------
L
L
I
K
P
R
V
A
A
A
L
R
G
E
-------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
43.10
19%
36
- C2 -
2CME
1
ORF9B_CVHSA
A:
[1-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
P
-
A
L
H
L
--
V
D
P
Q
I
Q
L
T
I
T
A
D
P
K
V
Y
P
I
I
--
L
R
L
G
S
N
L
S
L
-----------
S
M
A
R
-----------
R
N
--------
L
D
S
L
E
-----
A
R
A
F
Q
-
S
T
P
I
V
V
Q
M
T
K
L
A
T
T
E
E
L
P
D
E
F
V
V
V
T
A
K
--------------------------------------------------------------------------------------------------------------
35
Fugue
42.23
13%
21
* C5 *
2W0C
-
P6_BPPM2
T:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
N
F
-
L
T
K
N
F
V
W
I
L
A
A
G
-----
V
G
V
W
F
Y
Q
K
A
D
N
A
A
K
T
--
A
T
--
K
P
I
A
-----------------
D
-
F
L
A
E
--
L
Q
F
L
V
N
G
S
N
Y
V
K
F
P
N
A
G
F
V
--
L
T
R
D
A
L
--
Q
D
--
D
----
F
I
A
Y
D
D
R
---------------------
I
K
A
W
L
G
T
H
D
R
H
K
D
F
L
-
A
E
I
L
D
H
E
R
R
V
K
P
V
Y
R
K
L
I
G
N
I
I
D
A
S
T
I
R
A
A
S
G
V
E
L
------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.79
27%
-2
- C4 -
4FZM
2
?
A:
[221-277]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
T
-----
F
S
G
E
I
R
A
F
N
D
V
Y
D
A
N
--
P
S
--
N
H
R
G
W
L
G
E
N
-------
L
T
S
L
L
S
-
A
V
P
F
--
T
S
Y
S
I
E
I
P
G
S
L
P
V
T
V
S
G
N
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
41.32
25%
1
- C4 -
4FZN
-
?
A:
[221-277]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
T
-----
F
S
G
E
I
R
A
F
N
A
V
Y
D
A
N
--
P
S
--
N
H
R
G
W
L
G
E
N
-------
L
T
S
L
L
S
-
A
V
P
F
--
T
S
Y
S
I
E
I
P
G
S
L
P
V
T
V
S
G
N
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------