@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1898: (2016-03-29 )
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAWNYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLKQIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
Atome Classification :
(20 SA)
-----------------------------.........10...----------------....----.20........30..---...----...--------40------------..---------...-..-..50...------------.....60...-.-----....--70........-----80-------...---.....90.........100.--......110.-......120....------..----.130-----..-......---140..-.....-.150.......160--.---.......----------------170...----.----.----..180......-.----.190...--------.---....200-.-.-.-..-.--..--210.......220.-.......230-----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------MK
K
T
L
L
A
S
S
L
A
V
G
L
----------------
G
I
VA----GNAGHEAHASEADL
N
---
K
A
S
----
L
A
Q
--------
M
-------------
A
Q---------SND-QT-LNQKPIE------------AG
A
Y
N
Y
T
F
DY-E-----
G
F
T
Y
--
H
FESDG
T
H
F
A
-----
W
N
-------
Y
HA---TGANGA-NMSAQAPATNNVE--PSAVQANQVQ-SQEVEAPQNAQTQ------QP----QAS------TS-NN
S
Q
V
T
---A-TPT-ESKAS-EG
S
S
V
N
V
N
A
H
L
K
Q
---
I
---
A
Q
RESGG----------------
N
I
H
A
VN----P----T----SGAA-
G
K
Y
Q
F
L
-
Q
----
S
T
-
W
D
SV--------A---PAKYK-G-V-S-P-AN-A--
P
E
--
S
V
QD
A
A
A
V
K
L
Y
N-T-GGAGHWVTA------------------------------------------------------
46
Fugue
68.49
18%
3
- C2 -
4Z9N
5
?
A:
[9-328]
--------------------------AD
T
L
S
D
V
K
A
K
G
F
L
Q
C
G
V
N
TGLL-----------
G
F
A
S
----
P
N
D
K
G
E
W
S
G
F
D
V
D
Y
C
---
R
A
V
----
A
S
A
--------
I
FGDPTK
V
K
F
T
P
L
N
A
K
---------
E
R
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-
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A
-
L
Q
S
G
E
V
D
------------
V
L
I
R
N
T
T
W
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-
S
R
D
T
SL
G
L
D
F
AG
I
N
Y
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M
-----
I
N
SKKLAGI
N
S
A
---
L
Q
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V
Q
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G
T
T
T
E
L
N
M
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A
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Y
F
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M
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Y
N
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V
V
F
E
K
I
E
E
A
N
------
A
A
----
Y
D
S
GRCD
A
Y
T
T
-
D
Q
S
S
L
Y
---
G
-
V
R
L
-
A
L
A
N
P
-
D
D
H
V
I
-----
L
P
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---
I
---
I
S
K
E
P
F
G
----------------
L
T
V
R
----------------
Q
G
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A
-
R
W
A
D
V
V
-
R
----
W
T
-
H
N
A
L
--------
L
---
N
A
E
E
Y
-
G
-
I
-
T
-
Q
-
A
N
-
V
--
E
E
MK
K
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D
N
P
D
I
K
R
L
L
G
-
A
-
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A
D
T
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D
L
GLDKD
W
V
V
K
I
I
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VGN
Y
G
E
I
F
E
R
N
IGSGSPLKIARGLNAQWNKGGL
Q
Y
G
I
P
VR
49
Fugue
67.81
16%
4
- C5 -
4KXR
-
?
C:
[8-298]
-----------------T
D
I
T
V
N
V
D
G
F
W
M
L
Q
A
L
L
D
I
R
H
V
A
P
E
L
R
C
R
P
Y
VH
P
G
M
A
V
M
R
E
Q
G
I
V
V
----
N
D
A
V
N
E
Q
V
A
A
R
M
K
V
L
---
A
A
P
D
L
E
V
V
A
L
--------
L
-------------
S
R
GKLLYG
V
I
D
D
E
N
-
Q
P
-
P
G
S
R
D
I
P
------------
D
N
E
F
R
V
V
L
A
R
-
R
-----
G
Q
H
W
V
-
S
A
V
R
V
G
N
D
I
T
-----
V
D
-------
D
V
T
V
S
D
S
A
S
I
A
A
-
L
V
M
D
G
L
E
S
I
H
H
A
D
--
P
A
A
I
N
A
V
N
V
P
-
M
E
E
M
L
E
A
T
K
S
W
Q
E
S
GFNVF
S
G
----
G
D
L
------
R
R
-
M
G
I
S
A
A
---
T
-
V
A
A
-
L
G
Q
A
L
-
S
D
P
A
A
E
V
A
V
Y
A
R
Q
---
Y
R
DD
A
K
G
P
S
A
S
----------------
V
L
S
L
K
D
----
G
----
S
----
G
G
R
I
-
A
L
Y
Q
Q
A
-
R
----
E
A
-
W
L
A
I
--------
C
---
P
A
------------------
T
P
--
Q
L
V
Q
V
G
V
K
T
V
L
D
-
T
-
L
P
Y
G
E
W
K
T
H
S-----------------------------------------------------
47
Fugue
67.15
23%
6
- C8 -
2W1N
1
A:
[10-237]
------------------AE
V
T
G
S
V
S
L
E
A
L
E
E
V
Q
V
G
E
N
I
E
V
G
V
----------------
G
I
D
E
----
L
V
-
N
A
E
A
F
A
Y
D
F
T
L
N
Y
DE
N
A
F
----
E
Y
V
--------
E
-------------
A
I
---------
S
D
D
G
V
F
-
V
N
A
K
K
I
E
------------
D
G
K
V
R
V
L
V
S
S
L
T
-----
G
E
P
L
--
P
A
K
E
V
L
A
K
V
V
-----
L
R
-------
A
E
A
---
K
-
T
E
G
S
-
N
L
S
V
T
N
S
S
V
G
D
G
E
G
L
V
H
E
I
A
G
T
E
K
T
-
V
N
I
I
E
G
T
S
P
E
I
V
V
------
N
P
V
R
DF
K
A
S
------
E
I
-
N
K
K
N
V
T
---
V
-
T
W
T
-
E
P
E
T
T
-
E
G
--------
L
E
G
---
Y
---
I
L
Y
K
D
G
-------------------
K
K
V
A
----
E
----
I
----
G
K
D
E
-
T
S
Y
T
F
K
-
K
LNRH
T
I
-
Y
N
F
K
--------
I
---
A
A
K
Y
S
----------
N
-
G
--
E
V
--
S
S
K
E
S
L
T
L
R
-------------
T
A
------------------------------------------------------
41
Fugue
63.52
24%
-11
- C9 -
1XSF
-
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
V
------
V
T
-
P
A
H
E
A
V
---
V
-
R
V
G
-
T
K
P
G
T
-
E
V
P
P
V
I
D
G
S
I
W
D
A
---
I
---
A
G
C
E
A
G
G
----------------
N
-
W
A
I
N
----
T
----
G
----
N
G
Y
Y
-
G
G
V
Q
F
D
-
Q
----
G
T
-
W
E
A
N
--------
G
---
G
L
R
Y
A
-
P
---
R
-
A
-
D
L
-
A
--
T
R
--
E
E
Q
I
A
V
A
E
V
T
R
L
-
R
-
Q
G
W
G
A
W
P
V
C
A
A
R
A
GAR-----------------------------------------------
45
Fugue
63.24
10%
11
* C5 *
4G6D
-
?
B:
[1-198]
-----------------------------
M
K
L
K
I
L
D
K
D
----
N
----------------
A
T
L
N
----
V
F
H
R
N
K
E
H
K
T
I
D
N
V
P
---
T
A
N
----
L
V
D
--------
W
-------------
Y
P
---------
L
S
N
-------------------------
A
Y
E
Y
K
L
S
R
-
N
-----
G
E
Y
L
--
E
L
K
R
L
R
S
T
L
P
-----
S
S
-------
Y
G
L
---
D
D
N
N
Q
D
-
I
I
R
D
N
N
H
---
R
C
K
--
I
G
Y
W
Y
N
P
A
V
R
-
K
D
N
L
K
I
I
E
K
A
K
Q
Y
------
G
L
----
P
I
I
------
T
E
-
E
Y
D
A
N
T
---
V
-
E
Q
G
-
F
R
D
I
G
-
V
I
F
Q
S
L
K
T
I
V
V
T
R
---
Y
---
L
E
G
K
T
E
E
----------------
E
L
R
I
F
N
----
M
----
K
----
S
E
E
S
-
Q
L
N
E
A
L
-
K
-----------------------------------
E
-
S
D
-
F
--
S
V
--
D
L
T
Y
S
D
L
G
Q
I
Y
N
-
M
-
L
L
L
M
K
K
I
S
K
------------------------------------------------------
42
Fugue
63.13
15%
16
* C8 *
4LL1
-
TXNIP_HUMAN
A:
[5-296]
IK
S
F
E
V
V
F
NDPEKVYGSG
E
K
V
A
G
R
V
I
V
E
V
C
E
V
T
R
V
K
A
V
R
I
L
A
C
----------------
G
V
A
K
----
V
L
W
M
Q
G
S
Q
Q
C
K
Q
T
S
E
---
Y
L
R
----
Y
E
D
--------
T
-------------
L
L
---------
L
E
D
-
Q
P
-
T
G
E
N
E
M
V
------------
I
M
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P
G
N
K
Y
E
Y
-
K
F
----
G
F
E
L
--
P
Q
G
P
L
G
T
S
F
K
-----
G
K
-------
Y
--------
G
S
V
-
D
Y
W
V
K
A
F
L
D
R
P
S
Q
--
P
T
Q
E
T
K
K
N
F
E
V
V
P
D
L
M
A
P
V
S
A
K
K
E
------
K
K
----
V
S
S
------
M
F
I
P
D
G
R
V
S
---
V
-
S
A
R
I
D
R
K
G
F
C
E
G
D
E
I
S
I
H
A
D
F
E
N
---
T
---
S
S
R
I
V
V
P
----------------
K
A
A
I
V
A
----
R
----
H
----
T
Y
L
A
N
G
Q
T
K
V
L
-
T
----
Q
K
-
L
S
S
V
R
G
NHIISG
T
---
C
A
S
W
R
-
G
-
K
-
S
L
R
-
V
Q
-
K
--
I
N
--
I
L
R
V
E
Y
S
L
L
I
Y
V
-
S
-
V
P
G
S
K
K
V
I
L
D
L
P
L
V
I
G
S----------------------------------------------
48
Fugue
62.39
17%
7
* C6 *
3GN6
6
?
A:
[22-321]
--------------------------FNP
W
T
D
A
A
L
D
T
I
V
N
Q
A
L
----------------
T
L
Y
A
E
M
R
V
V
P
A
H
H
D
A
F
L
A
A
I
D
T
V
---
S
A
K
----
L
R
V
LPGFL
S
L
A
L
-------------
K
Q
M--------
S
G
D
-
S
T
M
V
K
N
Y
P
E
T
YKGVLAT
A
Y
L
D
G
V
A
A
G
T
Q
P
Y
F
Y
-
N
-----
L
F
V
R
--
F
A
D
G
R
A
A
R
A
A
G
F
E
A
L
F
E
-------
T
H
I
---
H
P
L
L
H
A
M
A
D
G
P
E
L
L
A
Y
R
A
V
L
--
Q
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V
V
A
G
D
R
H
A
-
I
Y
R
G
A
E
E
I
R
S
F
L
R
------
R
P
----
V
E
L
------
P
E
-
R
E
T
V
T
V
E
N
H
V
M
V
P
E
-
D
K
H
A
A
-
W
E
P
Q
V
A
I
L
L
Q
V
A
Q
D
T
F
E
---
P
Q
D
E
P
S
G
VG
L
P
G
A
RDNR
Y
Y
R
K
AL
S
T
E
I
L
R
----
N
----
A
----
H
A
D
G
-
G
L
R
A
Y
I
M
H
----
G
V
-
W
E
S
V
--------
W
---
D
H
E
N
S
-
H
-
L
-
D
-
P
-
R
F
-
L
--
A
A
--
A
G
P
V
G
A
A
A
V
----
V
-
G
P
V
E
P
F
Y
L
T
R
R
L
V
V
A
D-----------------------------------------------
19
HHSearch
58.38
23%
-4
- C9 -
2NWD
-
LYSC_HUMAN
X:
[23-111]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
L
A
N
W
M
C
---
L
---
A
K
W
E
S
G
Y
----------------
N
T
R
A
T
N
----
Y
----
N
AGDR
S
T
D
Y
-
G
I
F
Q
I
N
-
S
R---
Y
W
C
N
D
G
K
--------
T
PGA
V
N
A
C
H
-
L
S
C
-
S
-
A
-
L
L
Q
D
--
N
I
--
A
D
A
V
A
C
A
K
R
V
V
R
-
D
P
Q
G
I
R
A
W
V
A
-------------------------------------------------------
17
HHSearch
57.97
15%
-11
- C9 -
1IIZ
-
LYS_ANTMY
A:
[18-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
N
L
M
R
D
W
V
C
---
L
---
V
E
N
E
S
A
R
----------------
Y
T
D
K
I
A
N
V
NK
N
----
G
----
S
R
D
Y
-
G
L
F
Q
I
N
-
D
K---
Y
W
C
S
K
G
S
T-------
P
---
G
K
D
C
N
-
V
-
T
C
S
-
Q
-
L
L
T
D
--
D
I
--
T
V
A
S
T
C
A
K
K
I
Y
K
-
R
-
T
K
F
D
A
W
S
G
-------------------------------------------------------
24
HHSearch
57.27
21%
-7
- C9 -
1QQY
-
LYSC1_CANFA
A:
[22-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
S
L
A
N
W
V
C
---
M
---
A
E
Y
E
S
N
F
----------------
N
T
Q
A
F
N
G
R
NS
N
----
G
----
S
S
D
Y
-
G
I
F
Q
L
N
-
S
K---
W
W
C
K
S
N
S
HS------
S
---
A
N
A
C
N
I
M
-
C
-
S
-
K
-
F
L
D
D
--
N
I
--
D
D
D
I
A
C
A
K
R
V
V
K
D
P
-
N
G
M
S
A
W
V
--------------------------------------------------------
23
HHSearch
56.91
15%
-2
- C9 -
1B9O
1
LALBA_HUMAN
A:
[18-106]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
G
I
A
L
P
E
L
I
C
---
T
---
M
F
H
T
S
G
Y
----------------
D
T
Q
A
I
V
----
E
N
D--
E
----
S
T
E
Y
-
G
L
F
Q
I
S
-
N
K---
L
W
C
K
S
S
Q
VPQ-----
S
---
R
N
I
C
D
-
I
-
S
C
D
-
K
-
F
L
-
D
D-
D
I
--
T
D
D
I
M
C
A
K
K
I
L
D
-
I
-
K
G
I
D
Y
W
L
A
-------------------------------------------------------
26
HHSearch
56.57
22%
5
- C9 -
2Z2F
3
LYSC2_BOVIN
A:
[22-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
S
L
A
N
W
L
C
---
L
---
T
K
W
E
S
S
Y
----------------
N
T
K
A
T
N
----
Y
N
PSS
E
----
S
T
D
Y
-
G
I
F
Q
I
N
-
S
K---
W
W
C
N
D
G
K
TPN-----
A
---
V
D
G
C
H
-
V
-
S
C
S
-
E
-
L
M
E
N
--
D
I
--
A
K
A
V
A
C
A
K
H
I
V
S
-
E
-
Q
G
I
T
A
W
V
--------------------------------------------------------
15
PsiBlast_PDB
55.61
33%
14
- C9 -
3EO5
-
RPFB_MYCTU
A:
[288-352]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
A
G
C
E
A
G
G
----------------
N
-
W
A
I
N
----
T
----
G
----
N
G
Y
Y
-
G
G
V
Q
F
D
-
Q
----
G
T
-
W
E
A
N
--------
G
---
G
L
R
Y
A
-
P
-
R
-
A
-
D
L
A
T
-
R
--
E
E
--
Q
I
A
V
A
E
V
T
R
L
R
Q
----
G
W
G
A
W
---------------------------------------------------------
18
HHSearch
54.35
21%
7
- C9 -
2FBD
1
LYS1_MUSDO
A:
[16-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
P
K
S
E
L
P
Q
W
T
C
---
I
---
A
E
H
E
S
S
Y
----------------
R
T
N
V
V
G
----
P
TNSN
G
----
S
N
D
Y
-
G
I
F
Q
I
N
-
N
Y---
Y
W
C
Q
P
S
N
GRF-----
S
---
Y
N
E
C
H
-
L
-
S
-
C
-
D
-
A
L
-
L
TD
N
I
--
S
N
S
V
T
C
A
R
K
I
K
S
-
Q
-
Q
G
W
T
A
W
S
--------------------------------------------------------
27
HHSearch
53.94
21%
5
- C9 -
2GV0
-
LYSC_PELSI
A:
[23-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
S
L
G
D
W
V
C
---
T
---
A
K
H
E
S
N
F
----------------
N
T
A
A
T
N
----
Y
N
RGD
Q
----
S
T
D
Y
-
G
I
L
Q
I
N
-
S
R---
W
W
C
N
D
G
K
TPK-----
A
---
K
N
A
C
G
-
I
-
E
-
C
-
S
E
L
L
-
K
A-
D
I
--
T
A
A
V
N
C
A
K
R
I
V
R
D
P
-
N
G
M
G
A
W
V
A
-------------------------------------------------------
20
HHSearch
53.04
16%
8
- C9 -
1HML
3
LALBA_HUMAN
A:
[36-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
G
G
I
A
L
P
E
L
I
C
---
T
---
M
F
H
T
S
G
Y
----------------
D
T
Q
A
I
V
----
E
N
N--
E
----
S
T
E
Y
-
G
L
F
Q
I
S
-
N
K---
L
W
C
K
S
S
Q
VPQ-----
S
---
R
N
I
C
D
-
I
-
S
-
C
-
D
-
K
F
-
L
DD
D
I
--
T
D
D
I
M
C
A
K
K
I
L
D
-
I
-
K
G
I
D
Y
W
L
--------------------------------------------------------
50
Fugue
52.35
19%
25
- C6 -
4CT3
9
?
A:
[2-165]
---------------------------AK
T
Q
A
E
I
N
K
R
L
D
A
Y
A
K
----------------
G
T
V
D
------------------------
S
----
P
Y
R
--------
V
-------------
K
K
---------
A
T
S
-
Y
D
-
P
S
F
G
V
M
E
------------
A
G
A
----
I
D
A
-
D
-----
G
Y
Y
H
--
A
Q
Q
D
L
I
T
D
Y
V
-----
L
W
-------
L
--------------------
T
D
N
K
V
--
R
T
W
G
N
A
K
D
Q
I
-
K
Q
S
Y
G
T
G
F
K
I
H
E
N
------
K
P
----
S
-
T
------
V
P
-
K
K
G
W
I
A
---
V
-
F
T
S
-
G
S
Y
E
Q
-
W
G
----------
H
---
I
---
G
I
V
Y
D
G
G
----------------
N
----------------------
T
-
S
T
F
T
I
L
-
E
----
Q
N
-
W
N
G
Y
--------
A
---
N
K
K
-----------------
P
T
--
K
R
V
D
-------
N
-
Y
-
Y
G
L
T
H
F
I
E
I
P
V
K
A--------------------------------------------------
22
HHSearch
51.78
16%
7
- C9 -
1YRO
3
LALBA_MOUSE
A:
[18-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Q
G
I
S
L
L
E
W
A
C
---
V
---
L
F
H
T
S
G
Y
----------------
D
T
Q
A
V
V
----
N
D
N--
G
----
S
T
E
Y
-
G
L
F
Q
I
S
-
D
R---
F
W
C
K
S
S
E
FPE-----
S
---
E
N
I
C
G
-
I
-
S
-
C
-
D
-
K
L
-
L
DD
E
L
--
D
D
D
I
A
C
A
K
K
I
L
A
-
I
-
K
G
I
D
Y
W
K
--------------------------------------------------------
21
HHSearch
51.39
21%
8
- C9 -
1JUG
1
LYSC1_TACAC
A:
[23-110]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
L
P
N
W
V
C
---
T
---
A
F
H
E
S
S
Y
----------------
N
T
R
A
T
N
----
H
N
TD-
G
----
S
T
D
Y
-
G
I
L
Q
I
N
-
S
R---
Y
W
C
H
D
G
K
--------
T
PGS
K
N
A
C
N
-
I
-
S
C
S
-
K
-
L
L
D
D
--
D
I
--
T
D
D
L
K
C
A
K
K
I
A
G
-
E
A
K
G
L
T
P
W
V
A
-------------------------------------------------------
2
PsiBlast_PDB
47.10
32%
37
- C9 -
3BKV
1
?
A:
[90-150]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
-
N
K
S
R
A
A
---
A
-
T
P
V
-
M
N
A
V
E
-
N
A
T
G
V
R
S
Q
L
-
L
L
T
---
F
---
A
S
I
E
S
A
F
----------------
D
Y
E
I
K
A
----
K
----
T
----
S
S
A
T
-
G
W
F
Q
F
L
-
T
----
G
T
-
W
K
T
-------------------------------------------------------------------------------------------------------------------