@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0708: (2015-12-17 )
MNFYQKIYTHKVVFSSLFFLLFLFNVETLLFSHFSDDFSQLFFLFENHVYDFIIKLDYLGLIGVSSIYLLALILKPFTLTRQKCACIGILCLSFYAWNFPIKNSSIALYVFYFALLGTLLWRFLGASMKQSFLPSMNICVVWVFASSLQSFRFLSVSDCVDFSLFILALFLLILVLIYHKRLFGLYEYANTLILIVGLCVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEYIHNTLRRLEHKI
Atome Classification :
(17 SA)
--------------------------------------------------------------.........10........20------...-......30...---...-..40-------.....------....50.....----------.-----------..60.-....-----...70........80.---.......90..-----......100...--------....110.....---------------..120.......130.-----.-.-....-140...---....150....----------.-.---.160.......170-----..--------.......180.......190-----...----.-....200--.......210......-----------.220.-----..--....230---...-.....240...---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------M
N
F
Y
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-
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---
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-
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Q
--------
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F
F
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F
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----------
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-----------
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-
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-----
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A
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LKPFTL
T
R
Q
---
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C
A
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I
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I
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C
L
S
-----
F
Y
A
WNFPIKNSS--------
I
A
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V
F
Y
F
A
L
L
G
---------------
T
L
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FL-----P-S-M
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--
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E
HKI---------------------------
17
Fugue
82.17
18%
-185
- C11 -
4B3X
3
IF2_THET8
A:
[1-363]
------------------------------------MAKVR
I
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RRPRTMAELLR
11
Fugue
82.04
13%
-186
- C11 -
4AVA
9
PAT_MYCTU
A:
[2-333]
----------------------------------DG
I
A
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TGAR
V
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MDVFQGCP
A
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DSPRS
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DRERTVHGH
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GS
D
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DPT
V
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QGRG
I
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F
L
--------
I
G
A
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A
A
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D
G
V
E
R
F
A
A
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----
D
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--
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-----------
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PGPGE
L
S
--
L
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R
E
M
V
----
D
Q
I
-
N
R
V
A
R
Q
V
I
E
A
V
G--------------------------
13
Fugue
74.67
12%
-199
* C11 *
4U9P
-
Y1099_METJA
A:
[7-241]
-----------------------------------------------------------------------
H
M
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L
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P
-----------------------------
I
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V
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--------
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E
A
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------
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----------
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A
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GAD
Y
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N
Y
Y
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A
---------------
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A
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D
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-----
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AIKDGKT-
L
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A
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F
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------
Y
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----
K
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---------
A
G
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P
I
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E
----------
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I
-----
V
G
--
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R
G
A
A
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----
G
R
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L
V
K
E
L
K
E
L
C
---------------------------
16
Fugue
70.61
16%
-169
- C10 -
1ZYO
1
?
A:
[4-189]
---------------------------------------------------------------
S
F
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---
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---
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-----------------------------------
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----------------------------------
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----
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-------------------------------
20
Fugue
67.85
18%
-166
- C8 -
4RHO
1
?
A:
[4-259]
------------------------------------------------------------------
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----------------------
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VPDCYAK
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DLLPAYVDI---------------
14
Fugue
66.52
15%
-187
- C11 -
2B3W
-
RIBX_ECOLI
A:
[1-168]
--------------------------------------------------------------
M
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--------------------------------------------------------------------------------------
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-----
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HHHHH----------------------
15
Fugue
46.62
10%
-158
- C- -
3M73
4
TEHA_HAEIN
A:
[1-313]
MNITKPFPLPTGYF
G
I
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L
G
L
A
A
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A
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---------------
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L
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-----
A
-
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M
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N
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G
L
----
L
V
L
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M
T
I
Y
K
L
T
K
G
Q
F
FL-------------------------
8
HHSearch
38.25
12%
187
- C9 -
2LOT
-
APJ_HUMAN
A:
[43-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
G
N
G
-------
L
V
--------
L
W
T
V
F
R
K
K
G
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------
19
Fugue
30.45
20%
59
- C11 -
2JXF
-
?
A:
[1-30]
-----------------------------------------------------------------------------------------------------------
Q
T
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W
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K
--------
L
E
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F
W
------
A
K
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M
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----------
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Y
L
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-
S
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
28.93
26%
109
- C11 -
3OAK
-
SPT6_YEAST
C:
[233-263]
--------------------------------------------------------------------------------------------------
D
P
F
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M
---
S
D
K
-
I
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--------
M
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F
G-----
D
G
H
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Y
D
W
A
L
E
I
----------
E
-----------
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
23.55
29%
1284
- C4 -
1IIJ
-
A:
[28-34]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
L
I
K
R
R
R
-------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
20.26
33%
856
- C5 -
2JXC
-
B:
[23-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
L
Q
D
V
Q
-----
P
-
S
P
I
N
P
F
-
S
A
F
F
E
E
---
Q
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
13.85
27%
994
- C1 -
2HIP
1
HIP1_HALHA
A:
[60-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
G
W
C
S
----
V
Y
A
-
P
A
S
-----------------------------------
6
HHSearch
9.67
20%
1111
- C2 -
1ISU
1
HIP2_RHOTE
A:
[51-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
G
Y
C
D
----
A
F
I
-
V
K
K
-----------------------------------
7
HHSearch
7.73
9%
1004
- C3 -
3H31
1
?
A:
[62-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
G
Y
C
T
----
S
W
V
-
Q
K
A
T
----------------------------------
2
HHSearch
6.61
25%
1362
- C6 -
1HPI
1
HIP2_ECTSH
A:
[62-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
W
C
T
----
A
W
V
-
A
R
------------------------------------
1
HHSearch
6.17
22%
1256
- C7 -
1HLQ
1
HIP_RHOFE
A:
[65-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
W
C
S
----
A
W
A
-
K
K
A
-----------------------------------