@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0930: (2015-12-19 )
MMFELTKKTKFDGEMIGYTEELLTFLVRDFFNGIFKSKVIPKMPIFCGDVKCEDFNALRSLVYLSVLELEETINPNKIPF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...----------------......10..-......---20......----..30----...-------......40-..----....--..50.--..-.....60........70........80---------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
M
F
----------------ELTKKTKFDG-EMIG
Y
T
---
E
E
L
L
T
F
L
V
----
R
D
F
-----
F
N
G
-------
I
F
KSKVIP-KM----PIFC--GDVKC--
E
D
-
F
N
A
L
R
S
L
V
Y
L
S
V
L
E
L
E
ETINPNKIPF----------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
76.25
11%
-111
* C7 *
2V75
-
NAB2_YEAST
A:
[6-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y
T
E
N
L
K
V
I
V
A
E
----------------
K
L
A
G
I
P
N
F
N
E
-
D
----
I
---
K
Y
V
A
E
Y
I
V
----
L
L
I
-----
V
N
G
-------
G
T
V
E
S
V
V
D
-
E
L
----
A
S
L
F
--
D
S
V
S
R
--
D
T
-
L
A
N
V
V
Q
T
A
F
F
A
L
E
A
L
Q
Q
G
E
S
A
E
N
I
V
S
K
I
R
M
M-----------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
74.43
36%
-168
- C6 -
4K86
1
A:
[440-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
E
D
L
K
T
H
M
V
VANT
M
E
D
-----
F
Q
K
-------
I
L
D
S
G
K
I
V
-
Q
I
----
P
-
F
C
--
G
E
I
D
C
--
E
D
-
W
I
K
K
T
T
A
R
D
M
G
A
K
S
L
C
I
P
F
K
P
L
C
E
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
73.47
17%
-97
- C7 -
3S24
4
MCE1_HUMAN
A:
[1-336]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAIFLEG
V
T
V
K
G
V
T
Q
V
TTQP
K
L
G
E
V
Q
Q
K
C
H
Q
F
C
GWEGSGFP
G
A
Q
P
V
S
M
D
K
Q
N
I
K
L
L
D
L
K
P
Y
K
V
S
W
K
A
D
G
T
R
Y
M
M
L
I
DGTN
E
V
F
M
I
D
RDN
S
V
F
H
V
S
N
L
E
F
P
F
RK
D
L
R
----------------
M
H
L
S
N
T
L
L
D
G
-
E
M
I
I
D
R
VNG
Q
A
V
P
R
Y
L
I
----
Y
D
I
-----
I
K
---------
F
N
S
Q
P
V
G
-
D
C
----
D
---------------
F
N
V
R
L
Q
C
I
E
R
E
I
I
S
P
R
H
E
K
M
K
T
G
L
I
D
KTQEP
F
S
V
R
N
K
P
F
F
D
ICT
S
R
K
L
L
EHEMD
G
L
I
F
Q
P
TGKYKPGRCDDI
L
K
W
K
PPSL
N
S
V
D
F
R
L
K
I
T
R
M
G
G
EGLLP
Q
N
V
G
L
L
Y
V
G
GYERPF
A
Q
I
K
V
T
KELKQYDN
K
I
I
E
C
K
F
E
NN
S
W
V
F
M
R
QRTDKSFPNA
Y
N
T
A
M
A
V
C
N
S
I
S
N
PVT
K
E
M
L
F
E
F
I
D
R
3
PsiBlast_PDB
71.76
36%
-166
- C6 -
4K87
1
A:
[440-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
E
D
L
K
T
H
M
V
VANT
M
E
D
-----
F
Q
K
-------
I
L
D
S
G
K
I
V
-
Q
I
----
P
-
F
C
--
G
E
I
D
C
--
E
D
-
W
I
K
K
T
T
A
R
D
Q
S
M
G
A
K
S
L
C
I
P
F
K
P
L
C
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
70.25
31%
-47
- C6 -
1UUR
-
STATA_DICDI
A:
[495-541]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
K
K
D
A
F
D
G
-
Q
L
E
I
T
W
---
A
Q
F
I
N
T
L
Q
----
R
H
F
-----
L
I
A
-------
T
K
Q
D
P
V
R
P
-
K
R
----
P
L
S
S
--
Y
D
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
69.78
36%
-153
- C6 -
4K88
1
A:
[440-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
E
D
L
K
T
H
M
V
V
A
NT
M
E
D
-----
F
Q
K
-------
I
L
D
S
G
K
I
V
-
Q
I
----
P
-
F
C
--
G
E
I
D
C
--
E
D
-
W
I
K
K
T
T
A
R
D
Q
S
M
G
A
K
S
L
C
I
P
F
K
P
L
C
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
68.59
18%
-54
- C5 -
4O66
1
SMAL1_MOUSE
A:
[10-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
L
R
G
----------------
A
C
I
K
T
G
D
R
F
R
-
V
K
I
G
Y
N
---
Q
E
L
I
A
V
F
K
----
S
------------------
L
P
S
R
H
Y
D
-
S
F
----
T
--------
K
T
--
W
D
-
F
S
M
S
D
Y
R
A
L
M
K
A
V
E
R
L
S
T
V
S
L
K
P
L
------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
68.50
36%
-153
- C6 -
4HVC
1
SYEP_HUMAN
A:
[424-463]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
E
D
L
K
T
H
M
V
VANT
M
E
D
-----
F
Q
K
-------
I
L
D
S
G
K
I
V
-
Q
I
----
P
-
F
C
--
G
E
I
D
C
--
E
D
-
W
I
K
K
T
T
A
R
M
G
A
K
S
L
C
I
P
F
K
P
L
C
E
L
Q
P
----------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
68.15
31%
-40
- C6 -
1UUS
-
STATA_DICDI
A:
[495-541]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
K
K
D
A
F
D
G
-
Q
L
E
I
T
W
---
A
Q
F
I
N
T
L
Q
----
R
H
F
-----
L
I
A
-------
T
K
Q
D
P
V
R
P
-
K
R
----
P
L
S
S
--
Y
D
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
66.26
32%
-138
- C6 -
3CWO
1
HIS6_THEMA
X:
[154-193]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
G
-
T
K
S
G
Y
D
---
T
E
M
I
R
F
V
R
---------------------------
P
L
T
-
T
L
----
P
I
I
A
SG
G
A
G
K
M
--
E
H
-
F
L
E
A
F
L
A
G
A
D
A
A
L
A
A
S
V
F
H
F
R
E
I
D
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
66.20
13%
-43
- C5 -
2LW6
-
?
A:
[19-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
----------------
Q
C
N
H
H
L
L
Y
N
G
-
R
H
W
G
T
I
---
R
K
K
A
G
W
A
V
----
R
F
Y
E
E
K
PG
Q
P
K
-------
R
L
V
A
I
C
K
N
-
A
S
----
P
V
H
C
--
N
Y
L
K
C
--
T
N
-
L
A
A
G
-----
F
S
A
G
T
S
T
D
V
L
S
S
G
T
V
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
62.16
18%
-60
* C5 *
2JMS
-
?
A:
[1-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
P
E
E
H
F
D
P
N
T
N
C
D
Y
T
N
S
-
Q
D
A
W
D
Y
C
T
----
N
Y
I
-----
V
N
S
------------------------
S
C
--
G
E
I
C
C
--
N
D
C
F
D
E
T
G
T
G
A
C
R
A
Q
A
F
G
N
S
C
L
N
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
60.20
34%
-139
- C4 -
2H2M
-
COMD1_HUMAN
A:
[14-52]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
L
N
A
L
A
----
Q
D
T
-----
F
H
G
YPGIT
E
E
L
L
R
S
Q
L
Y
P
-
E
V
----
P
---------
P
--
E
E
-
F
R
P
F
L
A
K
M
R
G
I
L
K
S
I
A
S
A
D
M
D
F
N
Q
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
55.41
24%
-123
- C6 -
2IG3
2
TRHBP_CAMJE
A:
[9-47]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
I
A
K
L
M
----
E
I
F
-----
Y
E
K
-------
V
R
K
D
K
D
L
G
-------
P
I
F
N
--
N
A
I
G
T
S
D
E
E
-
W
K
E
H
K
A
K
I
G
N
F
W
A
G
M
L
L
G
E
G
D
Y
N
G
Q
P
----------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
54.68
10%
-82
- C7 -
2OA4
-
?
A:
[1-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
F
LRKVEGPR
S
V
T
L
PDGS
I
M
T
R
A
D
L
P
P
A
-
N
T
R
R
W
V
---
A
S
R
K
I
A
V
V
----
R
G
V
-----
I
Y
G
-------
L
I
T
L
A
E
A
K
-
Q
T
YGLS
D
E
E
F
--
N
S
W
V
S
--
A
L
-
A
E
H
G
K
D
A
L
K
V
T
A
L
K
K
Y
R
Q
L
L
E
H
H
H
H
H
H---------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.86
29%
-75
- C6 -
1NO5
4
Y073_HAEIN
A:
[53-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
E
E
P
L
D
F
L
A
----
R
D
R
-----
L
K
E
-------
A
F
S
E
S
D
L
P
W
R
V
----
D
L
L
D
--
W
A
T
T
S
--
E
D
-
F
R
E
I
I
R
K
V
Y
V
V
I
Q
E
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
36.62
15%
-70
- C6 -
2KIN
-
B:
[23-49]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
T
H
V
P
Y
R
---
D
S
K
M
T
R
I
L
----
Q
D
S
-----
L
D
G
-------
N
C
R
T
T
I
V
I
-
C
C
----
S
P
S
V
--
F
N
E
A
E
--
T
K
-
S
T
L
M
F
G
Q
R
A
K
T
I
K
N
T
V
S
V
N
L
E
L
T
A
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
31.27
33%
-48
- C3 -
2DJ6
-
?
A:
[1-12]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
S
----------------
R
I
I
V
R
T
S
F
D
A
-
A
H
A
H
G
H
---
T
F
F
L
E
V
A
I
----
E
G
E
-----
I
K
N
-------
G
Y
V
M
D
F
L
E
-
L
R
----
K
I
V
E
--
E
I
T
K
E
--
L
D
-
H
R
N
L
N
N
I
F
E
N
P
T
T
E
N
I
A
L
W
I
G
E
R
I
R
D
----------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
30.17
8%
-25
- C7 -
1TF4
1
GUN4_THEFU
B:
[1-460]
EPAFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQKYIDDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVAL
V
Y
A
----------------
K
V
I
D
D
P
V
R
K
Q
-
R
Y
H
D
F
A
---
V
R
Q
I
N
Y
A
L
----
G
D
-------
N
P
-------
R
N
S
S
Y
V
V
G
-
F
G
----
N
----------------
N
P
P
R
N
P
H
H
R
T
A
H
G
S
W
T
D
S
I
A
S
P
A
E
N
RHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGGTPLADFPPTEEPDG----------------------------------------------------------------------------------------
14
HHSearch
26.22
33%
-20
* C6 *
1DJ8
-
HDEA_ECOLI
A:
[11-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
V
--
N
S
W
T
C
--
E
D
-
F
L
A
V
D
E
S
F
Q
P
T
A
V
G
F
A
E
A
L
N
N
K
D
K
P
E
----------------------------------------------------------------------------------------------------------------------------------------------------------