@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1162: (2015-12-05 )
MSMDWETFLDPYIQTVGELKIKLRGIRKQFRKQNRHSPIEFVTGRVKSVESIQEKMVLRGISEENLAQDLQDIAGLRIMVQFVDDVDEVLALLRKRHDMTVVQERDYITHMKSSGYRSYHVVVEYPVDTIDGQKKVLAEIQIRTLAMNFWATIEHSLNYKYQGDFPEEIKQRLEKTAKIALELDEEMRKIREDIREAQLLFDPLNRKLSDGVGNSDDTDEFYR
Atome Classification :
(20 SA)
-----------------------------..--.......10.-------....-...20........30.-----.......---40........50----...-------..--...60........70..-......80-----.........90......----------------------..100...------...-----------.110........120...-------....130.......140.......150-------------........160.......170.....-----...------180.......190-.......200.......210.......220.------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------MS--M
D
W
E
T
F
L
D
P
Y
-------
I
Q
T
V
-
G
E
L
K
I
K
L
R
G
I
R
K
Q
F
R
K-----QNRHS
P
I
---
E
F
V
T
G
R
V
K
S
V
E
S
----
I
Q
E
-------
K
M
--
V
LRGI
S
E
E
N
L
A
Q
D
L
Q
D
I
-
A
G
L
R
I
M
V
------
Q
F
V
D
D
V
D
E
V
L
A
L
L
R
KRH----------------------D
M
T
V
V
Q
E
R
------
D
Y
I
-----------
T
H
M-KSSGY
R
S
Y
H
V
V
V
E
Y-------PVDTID
G
Q
K
K
V
L
A
E
I
Q
I
R
T
L
A
M
N
F
W
A
--------------
T
I
E
HS
L
N
Y
K
YQGD
F
P
E
E
I
K
Q
-
R
L
E
K
T
-----
A
K
I
------
A
L
E
L
D
E
E
M
R
K
I
R
E
-
D
I
R
E
A
Q
L
L
F
D
P
L
N
R
K
L
SDGVGNSDD
T
D
EFYR------
10
HHSearch
93.78
78%
-106
- C4 -
2BE3
3
?
A:
[4-206]
-----------------------------
M
T
--
L
E
W
E
E
F
L
D
P
Y
-------
I
Q
A
V
-
G
E
L
K
I
K
L
R
G
I
R
K
Q
Y
R
K
-----
Q
N
K
H
S
P
I
---
E
F
V
T
G
R
V
K
P
I
E
S
----
I
K
E
-------
K
M
--
A
R
R
G
I
T
Y
A
T
L
E
H
D
L
Q
D
I
-
A
G
L
R
V
M
V
------
Q
F
V
D
D
V
K
E
V
V
D
I
L
H
K
R
Q
----------------------
D
M
R
I
I
Q
E
R
------
D
Y
I
-----------
T
H
R
-
K
A
S
G
Y
R
S
Y
H
V
V
V
E
Y
-------
T
V
D
T
I
N
G
A
K
T
I
L
A
E
I
Q
I
R
T
L
A
M
N
F
W
A
--------------
T
I
E
H
S
L
N
Y
K
Y
Q
G
D
F
P
D
E
I
K
K
-
R
L
E
I
T
-----
A
R
I
------
A
H
Q
L
D
E
E
M
G
E
I
R
D
-
D
I
Q
E
A
Q
A
L
F
D
P
--------------------------
2
PsiBlast_PDB
93.51
75%
-106
- C4 -
2BE3
3
?
A:
[5-206]
------------------------------
T
--
L
E
W
E
E
F
L
D
P
Y
-------
I
Q
A
V
-
G
E
L
K
I
K
L
R
G
I
R
K
Q
Y
R
K
-----
Q
N
K
H
S
P
I
---
E
F
V
T
G
R
V
K
P
I
E
S
----
I
K
E
-------
K
M
--
A
R
R
G
I
T
Y
A
T
L
E
H
D
L
Q
D
I
-
A
G
L
R
V
M
V
------
Q
F
V
D
D
V
K
E
V
V
D
I
L
H
K
R
Q
----------------------
D
M
R
I
I
Q
E
R
------
D
Y
I
-----------
T
H
R
-
K
A
S
G
Y
R
S
Y
H
V
V
V
E
Y
-------
T
V
D
T
I
N
G
A
K
T
I
L
A
E
I
Q
I
R
T
L
A
M
N
F
W
A
--------------
T
I
E
H
S
L
N
Y
K
Y
Q
G
D
F
P
D
E
I
K
K
-
R
L
E
I
T
-----
A
R
I
------
A
H
Q
L
D
E
E
M
G
E
I
R
D
-
D
I
Q
E
A
Q
A
L
F
D
P
--------------------------
1
PsiBlast_PDB
92.93
79%
-106
- C4 -
3L9D
-
?
A:
[1-199]
---------------------------------
M
N
W
E
E
F
L
D
P
Y
-------
I
Q
A
V
-
G
E
L
K
I
K
F
R
G
I
R
K
Q
F
R
K
-----
Q
K
R
H
S
P
I
---
E
F
V
T
G
R
V
K
P
I
E
S
----
I
K
E
-------
K
M
--
V
L
R
G
I
K
K
E
N
L
T
Q
D
M
Q
D
I
-
A
G
L
R
I
M
V
------
Q
F
V
D
D
V
N
D
V
L
E
L
L
R
Q
R
K
----------------------
D
M
K
V
I
Q
E
R
------
D
Y
I
-----------
N
N
--
K
P
S
G
Y
R
S
Y
H
V
I
V
E
Y
-------
P
V
D
T
I
S
G
Q
R
I
I
M
A
E
I
Q
I
R
T
L
A
M
N
F
W
A
--------------
T
I
E
H
S
L
N
Y
K
Y
H
G
E
F
P
E
D
I
K
R
-
R
L
E
L
T
-----
S
K
I
------
A
F
Q
L
D
E
E
M
R
Q
I
R
D
-
D
I
K
E
A
Q
L
L
F
----------------------------
23
Fugue
47.36
17%
-49
- C3 -
4K92
-
CLAP1_HUMAN
A:
[17-259]
------------------------------
A
--
V
D
E
E
D
F
I
K
A
F
DD
V
P
V
V
Q
I
Y
S
S
-
R
D
L
E
E
S
I
N
K
I
R
E
I
L
S
D
------
D
K
H
D
-------
W
E
Q
R
V
N
A
L
K
K
----
I
R
S
-------
L
L
--
L
A
G
A
A
E
Y
D
N
F
F
Q
H
L
R
L
L
-
D
G
A
F
K
L
S
A
K
DLR
S
Q
V
V
R
E
A
C
I
T
L
G
H
L
S
S
V
L
----------------------
G
N
K
F
D
H
G
A
------
E
A
I
M
P
T
I
F
N
L
IPNS
A
K
I
M
A
T
S
G
V
V
A
V
R
L
I
I
R
H
THIPRL
I
P
V
I
T
S
N
C
T
S
K
---
S
V
A
V
R
R
R
C
F
E
F
L
D
--------------
L
L
L
Q
E
W
Q
T
H
S
L
E
R
H
I
S
V
L
A
E
-
T
I
K
K
G
I
H
DAD
S
E
A
------
R
I
E
A
R
K
C
Y
W
G
F
H
S
H
F
S
R
E
A
E
H
L
Y
H
T
L
E
S
S
Y
Q
K
A
L
Q
S
---------------
26
Fugue
41.44
15%
-48
- C3 -
1BYG
1
CSK_HUMAN
A:
[15-276]
GWALNMKELKLLQTIGKGEF
G
D
V
M
LGDYR
G
---------
N
K
V
A
-------
V
K
C
I
K
-
N
D
A
Q
A
F
L
A
E
A
S
V
M
T
Q
-----
L
-
R
H
S
N
L
---
V
Q
L
L
G
V
I
V
--
E
E
GLY
I
V
T
E
Y
MAKGS
L
V
D
--
Y
L
R
S
R
G
--------
R
S
V
-
L
G
G
D
C
L
L
------
K
F
S
L
D
V
C
E
A
M
E
Y
L
E
G
N
N
FVHRDLAARN
V
L
V
S
EDN
V
A
K
V
S
D
F
G
-------------------------------------
L
L
P
V
K
W
-------
T
A
P
E
A
L
R
E
K
K
F
S
T
K
S
D
V
W
S
F
G
I
L
L
W
E
--------------
I
Y
S
F
G
R
V
P
Y
P
R
I
P
L
-
K
D
V
V
P
-
R
V
E
K
G
-----
Y
K
M
D
A
PDGC
P
P
A
V
Y
E
V
M
K
N
C
W
H
-
L
D
A
A
M
R
P
S
F
L
Q
L
R
E
Q
L
E
H
I
K
T
H
E
L
-------------
22
Fugue
40.06
14%
-10
- C4 -
3A2A
1
HVCN1_HUMAN
A:
[11-51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
Q
L
L
R
L
-----
K
Q
M
------
N
V
Q
L
A
A
K
I
Q
H
L
E
F
-
S
C
S
E
K
E
Q
E
I
E
R
L
N
K
L
L
R
Q
H
------------------
24
Fugue
37.18
20%
-35
* C3 *
1YOZ
-
Y941_ARCFU
A:
[9-124]
------------------------------------------------------------------------------------------
G
H
M
L
Y
I
N
S
----
F
L
D
-------
R
M
G
E
I
I
R
G
E
K
S
V
E
E
A
D
K
L
L
D
---
Q
K
N
I
F
E
------
M
F
R
S
D
C
E
E
I
L
N
L
Y
K
S
G
K
----------------------
A
E
------------------------------
K
E
E
V
Q
R
N
F
Y
L
L
K
T
Y
-------
V
V
S
Q
L
S
I
H
F
E
R
L
K
E
F
A
E
S
K
G
----------------------
E
K
K
L
D
P
E
V
I
N
E
I
A
L
Y
I
D
R
-
V
E
K
E
V
-----------------------------------------------------------------
21
Fugue
35.69
26%
27
* C4 *
4PNB
-
?
A:
[2-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
I
A
Q
-
S
I
K
E
I
-----
A
K
S
------
I
K
E
I
A
W
S
I
K
E
I
A
Q
-
S
I
K
G
---------------------------------
28
Fugue
35.26
15%
12
- C3 -
3J6V
-
?
O:
[54-256]
---------------------------------------
T
Q
K
P
-------
V
Q
Q
S
-
Q
E
D
D
P
P
P
S
M
L
L
K
D
Y
Q
N
-----
V
P
G
I
E
K
V
---
D
D
V
V
K
R
L
I
S
L
E
M
----
A
N
K
-------
K
E
--
M
L
K
I
K
K
E
Q
L
M
S
K
V
V
E
N
P
-----------------
K
D
T
S
S
L
E
A
Q
I
V
A
L
--------------------------
T
V
K
I
R
------
S
Y
E
-----------
E
H
M
-
Q
K
H
Q
K
D
K
A
H
K
--
R
Y
-------
L
L
M
S
I
D
K
R
Q
K
M
L
K
N
L
R
K
T
N
Y
P
V
F
E
K
T
--------------
C
K
E
L
G
I
E
Y
T
F
P
P
P
Y
H
R
K
I
H
R
-
R
L
A
T
K
-----
K
A
L
------
C
I
R
V
F
Q
E
V
Q
K
L
K
K
-
Q
K
R
A
L
K
T
A
A
A
A
A
Q
K
Q
G
Q
R
N
P
E
S
P
S
E
A
R
S
E
A
I
KETQ--
17
HHSearch
35.16
8%
-79
- C4 -
2NRQ
-
?
A:
[6-31]
--------------------------------------------------------------------------------------------------------------------------------------
A
I
I
S
V
F
I
------
H
E
T
E
D
Y
N
K
I
V
N
T
I
E
S
F
F
----------------------
S
P
L
I
S
N
S
K
------
K
N
V
-----------
T
T
A
-
Q
G
H
Y
G
N
K
I
I
I
L
E
Y
R
-------
F
D
R
K
S
G
E
Q
F
F
K
I
I
L
E
K
I
E
T
S
E
L
M
L
I
L
--------------
T
T
S
H
I
D
G
S
K
L
Y
L
R
F
D
K
Q
Y
L
I
-
A
E
H
R
L
-----
V
L
K
------
E
G
D
D
V
I
K
C
I
I
S
F
N
-
T
S
N
I
K
E
E
I
K
K
L
V
N
S
R
I
---------------------
25
Fugue
34.86
9%
-14
- C2 -
4E40
-
?
A:
[3-247]
-----------------------------
G
E
--
I
K
V
E
L
E
D
S
D
D
-------
V
A
A
A
-
C
E
L
R
A
Q
L
A
G
V
S
I
A
S
G
I
L
L
R
P
A
V
I
R
N
A
T
T
---
E
F
S
R
K
K
S
E
D
I
L
A
----
K
G
G
-------
A
A
--
V
E
R
A
S
A
A
V
D
R
V
S
G
L
D
K
T
N
E
T
A
Q
K
V
R
------
K
A
A
A
V
A
H
H
A
L
E
H
V
K
E
E
V
----------------------
E
I
V
A
K
K
V
N
------
E
I
I
-----------
E
L
T
-
A
G
A
T
E
H
A
K
G
A
K
A
N
G
-------
D
A
S
A
V
K
V
S
N
L
L
A
R
A
K
E
S
E
N
Q
Y
V
K
E
A
A
E
E
C
S
E
S
T
N
YDVT
A
K
S
L
A
A
A
L
D
K
L
P
G
V
K
E
D
N
A
V
K
T
-
T
F
Q
S
I
-----
L
T
S
------
L
D
N
L
D
K
D
V
K
S
V
E
Q
-
R
A
E
E
L
E
T
A
L
E
K
A
E
R
Q
L
E
K
A
E
K
A
A
E
E
A
E
T
E
S
S
K
V----
9
PsiBlast_PDB
30.31
25%
-37
- C4 -
4F1N
1
?
A:
[684-751]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
Y
V
L
R
R
G
N
----------------------
D
S
A
V
Y
D
R
L
------
K
Y
I
-----------
T
D
L
-
K
F
G
A
L
N
S
C
V
V
W
D
N
F
-------
K
K
N
S
I
Q
Y
N
S
N
V
V
M
K
M
N
L
K
L
L
G
S
N
H
S
L
--------------
S
I
E
N
N
K
L
L
I
D
K
E
S
N
L
P
I
L
V
L
-
G
S
D
V
T
-----
H
Y
P
------
E
K
D
Q
N
S
I
A
S
L
V
G
S
-
Y
D
D
K
F
T
Q
F
P
G
D
Y
M
L
Q
D
G
P
G
E
E
I
I
T
N
V
G
S
L
M
L
------
19
HHSearch
30.03
12%
-28
- C4 -
2PZZ
-
Y1564_METJA
A:
[5-29]
---------------------------------------------------------------------------------------------------------------------------------------
I
I
K
A
K
V
------
K
P
T
E
D
K
Y
K
V
K
K
A
I
L
N
I
F
----------------------
P
K
A
K
L
T
F
I
------
E
K
D
-----------
N
E
F
-
G
E
W
E
G
K
T
K
S
V
E
K
L
K
-------
E
L
L
R
S
Q
S
I
L
D
A
A
R
M
V
L
E
K
G
M
T
E
N
A
T
K
--------------
F
Y
L
N
K
Q
A
A
Y
V
G
A
V
N
F
D
I
D
T
H
-
G
G
I
F
V
-----
K
I
L
------
A
D
E
N
E
D
I
M
K
I
I
K
D
-
I
A
P
R
T
K
G
G
V
I
I
N
-------------------------
6
PsiBlast_PDB
29.36
36%
-46
- C4 -
4S3P
-
?
A:
[475-520]
-----------------------------------------------------------------------------------------------------------------------------------------------------
V
D
D
L
L
S
I
L
A
L
E
S
K
R
H
----------------------
R
C
M
V
I
G
E
D
LGTVP
V
E
I
V
-----------
G
K
L
-
R
S
S
G
V
Y
S
Y
K
V
L
Y
F
E
-------
N
D
H
E
K
T
F
R
A
P
K
A
Y
P
E
Q
S
M
A
V
A
A
T
H
D
L
--------------
P
T
L
R
G
Y
W
E
C
G
D
L
T
L
G
K
T
L
G
L
-
Y
P
D
E
V
-----
V
L
R
------
G
L
Y
Q
D
R
E
L
A
K
Q
G
L
-
L
D
A
L
H
K
Y
G
C
L
P
K
R
A
G
H
K
A
S
L
M
S
M
T
P
T
L
N
R
G
L
------
15
HHSearch
28.92
11%
-70
- C4 -
3D7A
-
Y1010_PYRHO
A:
[7-33]
------------------------------------------------------------------------------------------------------------------------------------
E
-
V
E
V
E
A
Y
V
------
Y
P
T
E
D
I
R
K
V
K
K
A
M
L
N
L
I
----------------------
P
G
L
Q
F
E
A
F
------
D
K
G
-----------
E
Y
V
-
I
L
V
G
R
T
K
D
K
R
A
L
Q
R
-------
L
Y
E
L
F
R
G
Q
Q
I
L
D
T
A
R
M
M
L
E
E
G
Y
F
G
E
E
--------------
I
I
I
K
V
H
K
Q
V
A
Y
V
G
K
V
N
F
N
E
D
-
S
P
L
G
P
-----
I
T
I
------
T
I
R
T
K
E
P
Q
K
L
M
K
W
-
L
A
P
R
T
K
D
G
V
P
I
E
-------------------------
7
PsiBlast_PDB
27.83
36%
-53
- C4 -
4S3Q
-
?
A:
[475-520]
-----------------------------------------------------------------------------------------------------------------------------------------------------
V
D
D
L
L
S
I
L
A
L
E
S
K
R
H
----------------------
R
C
M
V
I
G
E
D
LGTVP
V
E
I
V
-----------
G
K
L
-
R
S
S
G
V
Y
S
Y
K
V
L
Y
F
E
-------
N
D
H
E
K
T
F
R
A
P
K
A
Y
P
E
Q
S
M
A
V
A
A
T
H
D
L
--------------
P
T
L
R
G
Y
W
E
C
G
D
L
T
L
G
K
T
L
G
L
-
Y
P
D
E
V
-----
V
L
R
------
G
L
Y
Q
D
R
E
L
A
K
Q
G
L
-
L
D
A
L
H
K
Y
G
C
L
P
K
R
A
G
H
K
A
S
L
M
S
M
T
P
T
L
N
R
G
L
------
3
PsiBlast_PDB
27.42
30%
12
- C4 -
1D2Z
1
TUBE_DROME
B:
[55-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
P
A
E
I
K
K
-
G
F
K
Y
T
-----
A
Q
D
------
V
F
Q
I
D
E
A
A
N
R
L
P
P
-
D
Q
S
K
S
Q
M
M
I
D
E
W
K
T
S
G
K
L
N
E
R
P
T
V
G
V
L
L
Q
L
L
------
29
Fugue
25.09
11%
9
- C1 -
4KHB
2
?
B:
[4-189]
-----------------------------
M
A
A
I
E
S
F
D
H
I
Y
L
D
L
-------
S
K
E
P
-
G
K
C
R
F
A
E
N
G
L
G
W
K
P
V
G
-----
G
G
E
T
F
T
L
D
VS
N
I
G
G
A
Q
W
S
R
A
A
G
----
Y
E
V
-------
K
I
--
L
Q
R
T
-------
S
G
V
I
Q
L
-
D
G
F
Q
-----------
Q
E
D
Y
E
R
L
A
K
I
F
K
N
W
Y
----------------------
S
T
N
L
E
N
--------------------------
K
E
H
S
L
R
G
W
N
------------------------------------
W
G
--------------
K
A
E
F
G
---------
K
A
E
L
T
F
-
N
V
Q
N
R
-----
P
A
F
------
E
I
P
Y
S
E
I
A
N
T
N
L
A
-
G
R
N
E
I
A
V
E
F
A
P
G
Q
V
K
S
K
K
A
S
A
S
R
D
Q
L
V
E
I
R
F
Y
I
P
GTT
8
PsiBlast_PDB
24.38
22%
-25
- C4 -
4UXV
-
EZRA_BACSU
A:
[187-247]
---------------------------------------------------------------------------------------------------------------------------------------
N
L
E
R
L
Q
------
S
Y
I
D
D
V
P
K
L
L
A
D
C
K
Q
T
V
----------------------
P
G
Q
I
A
K
L
K
------
D
G
Y
-----------
G
E
M
-
K
E
K
G
Y
K
L
E
H
I
Q
L
D
K
-------
E
L
E
N
L
S
N
Q
L
K
R
A
E
H
V
L
M
T
E
L
D
I
D
E
A
S
--------------
A
I
L
Q
L
I
D
E
N
I
Q
S
V
Y
Q
Q
L
E
G
E
-
V
E
A
G
Q
-----
S
V
L
------
S
K
M
P
E
L
I
I
A
Y
D
K
L
-
K
E
E
K
E
H
T
K
A
E
T
E
L
V
K
E
S
Y
R
L
T
A
G
E
L
G
K
Q
Q
A
F
------
4
PsiBlast_PDB
23.71
37%
15
- C4 -
1T5O
-
MTNA_ARCFU
A:
[88-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
T
A
V
N
L
F
V
--------------
G
I
E
R
A
L
N
A
A
L
K
G
E
S
V
E
E
V
K
E
L
A
L
R
E
A
-----
E
K
L
------
A
E
E
D
V
E
R
N
R
K
M
G
E
-
Y
G
A
E
L
L
E
D
G
D
V
V
L
T
Y
C
N
A
G
R
L
A
T
V
D
W
G
T
A
L
G
------