@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1766: (2015-12-10 )
METKINNSQKNRYKFVFGDKPLTLTTDKDNLFMEEIERVATEKYEAIKEKLPNADNETIAILMAINALSVQLSREIDIEKMEDELNKLRSKTISDIKEKVSED
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-.......-20........-30........40-....-..-...50---.--...--.....60----..--...-..-----------..70.-..------..---...80-........90---.-.--.-..-...100.-----------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------METKINNSQK
N
R
-
Y
K
F
V
FGD-K
P
L
T
L
TTDKD-
N
L
F
M
E
E
I
E
R
V
A
--
T
E
K
Y
-
E
A
-
I
K
E
K----L--PNA--DN
E
T
I
A
-----
I
L
--
M
A
I
-
N
A
-----------
L
S
V
Q
L-SR------EI---
D
I
E
K
M
-
E
D
E
L
N
K
L
R
S
K
---
T
-
I
--
S
-
D
I
-
K
E
K
VSED-----------------------------------------------------------------------------------------------
14
PsiBlast_PDB
74.90
24%
-8
- C5 -
1TKG
1
SYT_ECOLI
A:
[39-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
G
E
L
V
D
A
-
C
D
L
I
E
N
D
-
A
Q
L
S
I
I
T
A
K
D
-
E
E
G
L
E
I
I
R
H
S
C
--
A
H
L
L
G
H
A
-
I
K
Q
L
----
W
--
P
H
T
--
K
M
A
I
G
P
-----
V
I
--
D
N
G
-
F
Y
-----------
Y
D
V
D
L
-
D
R
------
T
L
T
Q
E
D
V
E
A
L
-
E
K
R
M
H
E
L
A
E
K
---
N
-
Y
--
D
-
V
I
-
K
K
K
V
S
W
H
-----------------------------------------------------------------------------------------------
13
PsiBlast_PDB
72.06
24%
6
- C5 -
1TKE
1
SYT_ECOLI
A:
[39-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
G
E
L
V
D
A
-
C
D
L
I
E
N
D
-
A
Q
L
S
I
I
T
A
K
D
-
E
E
G
L
E
I
I
R
H
S
C
--
A
H
L
L
G
H
A
-
I
K
Q
L
----
W
--
P
H
T
--
K
M
A
I
G
P
-----
V
I
--
D
N
G
-
F
Y
-----------
Y
D
V
D
L
-
D
R
------
T
L
T
Q
E
D
V
E
A
L
-
E
K
R
M
H
E
L
A
E
K
---
N
-
Y
--
D
-
V
I
-
K
K
K
V
S
W
H
-----------------------------------------------------------------------------------------------
15
PsiBlast_PDB
70.96
24%
3
- C5 -
1TKY
1
SYT_ECOLI
A:
[39-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
G
E
L
V
D
A
-
C
D
L
I
E
N
D
-
A
Q
L
S
I
I
T
A
K
D
-
E
E
G
L
E
I
I
R
H
S
C
--
A
H
L
L
G
H
A
-
I
K
Q
L
----
W
--
P
H
T
--
K
M
A
I
G
P
-----
V
I
--
D
N
G
-
F
Y
-----------
Y
D
V
D
L
-
D
R
------
T
L
T
Q
E
D
V
E
A
L
-
E
K
R
M
H
E
L
A
E
K
---
N
-
Y
--
D
-
V
I
-
K
K
K
V
S
W
H
-----------------------------------------------------------------------------------------------
11
PsiBlast_PDB
69.56
24%
-4
- C5 -
1QF6
-
SYT_ECOLI
A:
[39-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
G
E
L
V
D
A
-
C
D
L
I
E
N
D
-
A
Q
L
S
I
I
T
A
K
D
-
E
E
G
L
E
I
I
R
H
S
C
--
A
H
L
L
G
H
A
-
I
K
Q
L
----
W
--
P
H
T
--
K
M
A
I
G
P
-----
V
I
--
D
N
G
-
F
Y
-----------
Y
D
V
D
L
-
D
R
------
T
L
T
Q
E
D
V
E
A
L
-
E
K
R
M
H
E
L
A
E
K
---
N
-
Y
--
D
-
V
I
-
K
K
K
V
S
W
H
-----------------------------------------------------------------------------------------------
12
PsiBlast_PDB
68.20
24%
6
- C5 -
1TJE
-
SYT_ECOLI
A:
[39-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
G
E
L
V
D
A
-
C
D
L
I
E
N
D
-
A
Q
L
S
I
I
T
A
K
D
-
E
E
G
L
E
I
I
R
H
S
C
--
A
H
L
L
G
H
A
-
I
K
Q
L
----
W
--
P
H
T
--
K
M
A
I
G
P
-----
V
I
--
D
N
G
-
F
Y
-----------
Y
D
V
D
L
-
D
R
------
T
L
T
Q
E
D
V
E
A
L
-
E
K
R
M
H
E
L
A
E
K
---
N
-
Y
--
D
-
V
I
-
K
K
K
V
S
W
H
-----------------------------------------------------------------------------------------------
24
HHSearch
66.37
17%
-60
- C5 -
1T3U
-
ZAPA_PSEAE
A:
[6-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
L
T
V
Q
I
L
D
-
K
E
Y
C
I
N
C
P
D
D
E
R
A
N
L
E
S
A
A
R
Y
L
--
D
G
K
M
-
R
E
-
I
R
S
S
----
G
--
K
V
I
--
G
A
D
R
V
A
-----
V
M
--
A
A
L
-
N
I
-----------
T
H
D
L
L
-
H
R
------
K
E
---
R
L
D
Q
E
-
S
S
S
T
R
E
R
V
R
E
---
L
-
L
--
D
-
R
V
-
D
R
A
L
A
N
------------------------------------------------------------------------------------------------
42
Fugue
62.75
17%
-41
- C2 -
3ES5
-
?
A:
[42-420]
MRLGW
I
D
P
L
P
Q
V
DTIFPLGLEPNVESIPA
G
E
V
E
L
DFN
L
P
E
T
I
A
K
P
F
A
D
T
VTSVGDRIQLV
D
D
D
K
E
N
I
A
T
S
I
Y
G
L
S
F
F
K
A
A
R
Q
L
Y
S
T
ML
D
H
E
K
A
V
N
QPLKAVYYDETPIP
A
H
M
S
G
A
L
GII
G
H
M
K
T
KVGDVLVKD
A
G
V
L
F
K
R
G
T
A
A
G
V
T
K
F
S
E
I
DNDKTWNLDCSKLVWAD
H
S
S
L
S
M
I
K
R
L
A
S
E
K
I
S
Q
L
V
K
Q
R
-
Y
R
----------
V
T
D
A
Q
G
-
H
V
Y
S
V
S
M
P
Q
L
T
--
D
Q
A
L
-
P
D
-
Y
Y
D
S
----
I
--
P
D
V
AP
N
S
D
Q
L
R
-----
V
L
--
T
A
A
-
L
Q
-----------
M
S
L
A
Q
-
F
R
N
DELPH
D
E
---
D
R
S
D
L
-
L
T
T
L
D
L
L
Y
A
D
GAY
E
-
I
--
S
-
A
L
-
R
D
Q
F
E
L
L
M
A
R
Y
T
T
DF
K
W
R
V
E
S
I
F
K
V
G
P
P
PAGTTGYGAQT
V
S
S
T
GN
T
A
R
W
Q
F
PLS
D
A
D
I
N
I
G
Y
L
F
SPSK
S
F
S
L
F
P
K
M
V
G
Y
S
KRA
R
E
D
A
S
A
S
F
A
N
S
DAKKFYAD
41
Fugue
62.61
24%
14
* C3 *
1DDT
-
?
?:
[200-380]
---------------------------------------------------------------------------------------------------------------------------------------------------------SCINLD
W
D
V
I
R
D
K
T
K
T
K
I
E
S
L
K
E
H
G
P
I
K
N
K
M
S
E
S
P
N
K
-------------
T
V
S
E
E
K
A
-
K
Q
Y
L
E
E
F
H
Q
T
A
--
L
E
H
P
-
E
L
-
S
E
L
K
----
T
--
V
T
G
--
T
N
P
V
F
A
------
G
--
A
N
Y
-
A
A
-----------
W
A
V
N
V
-
A
Q
------
V
I
---
D
S
E
T
A
-
D
N
---------------------
L
E
K
T
T
A
A
L
S
I
LPG
I
G
S
V
M
GIADGAVHHNT
E
E
I
V
A
Q
S
I
A
L
S
S
L
M
V
A
Q
A
I
P
L
VGELVDIGFAAY
N
F
V
E
S
I
I
N
L
F
Q
V
V
H
N
S
Y
N
R
P
A
Y
------------------
22
HHSearch
55.72
12%
-49
- C5 -
3HNW
5
?
A:
[9-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
A
E
V
I
L
G
G
-
K
V
I
K
L
G
G
Y
E
S
-
E
E
Y
L
Q
R
V
A
S
Y
I
--
N
N
K
I
-
T
E
-
F
N
K
E
----
E
S
Y
R
R
M
--
S
A
E
L
R
T
-----
D
M
--
M
Y
L
-
N
I
-----------
A
D
D
Y
F
-
K
A
------
K
K
---
M
A
D
S
L
-
S
L
D
I
E
N
K
D
K
E
---
I
-
Y
--
D
-
L
K
-
H
E
L
I
A
A
Q
-----------------------------------------------------------------------------------------------
40
Fugue
55.48
10%
-35
- C3 -
2LTL
-
NFU1_YEAST
A:
[1-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MGHH
H
H
H
H
S
H
MNSQR
L
I
H
I
K
T
L
T
T
P
N
E
N
A
-
L
K
F
L
S
T
D
-
G
E
M
L
Q
T
R
G
S
K
-
S
I
V
I
K
N
T
D
E
N
L
--
I
N
H
S
-
K
L
-
A
Q
Q
I
----
F
--
L
Q
C
--
P
G
-
V
E
S
-----
L
M
--
I
G
D
-
D
F
-----------
L
T
I
N
K
-
D
R
------
M
V
---
H
W
N
S
I
-
K
P
E
I
I
D
L
L
T
K
---
Q
-
L
--
A
-
Y
G
-
E
D
V
I
S
K
E
-----------------------------------------------------------------------------------------------
37
Fugue
53.62
24%
-20
- C5 -
2Q6Q
3
SPC42_YEAST
A:
[3-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
N
-
K
E
-
L
N
F
K
----
L
--
R
E
K
--
Q
N
E
I
F
E
-----
L
K
--
K
I
A
-
E
T
-----------
L
R
S
K
L
-
E
K
------
Y
V
---
D
I
T
K
K
-
L
E
D
Q
N
L
N
L
Q
I
---
K
-
I
--
S
-
D
L
-
E
K
K
L
S
D
A
-----------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.30
25%
-34
- C5 -
4PO2
1
HS71A_HUMAN
A:
[123-199]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
I
T
N
D
K
G
-
R
L
S
K
E
E
I
E
R
M
V
Q
E
A
E
K
Y
-
K
A
-
E
D
E
----------
V
--
Q
R
E
R
V
S
-----
A
K
--
N
A
L
-
E
S
-----------
Y
A
F
N
M
-
K
S
------
A
V
---
E
D
E
G
L
-
K
G
K
I
S
E
A
D
K
K
---
K
-
V
--
L
-
D
K
-
C
Q
E
V
I
S
W
-----------------------------------------------------------------------------------------------
38
Fugue
48.43
13%
-6
- C3 -
2QCO
1
?
A:
[6-207]
--------------------------------------------------------------------------------------------------------------------------------------------------T
P
S
Q
K
V
L
A
R
Q
E
K
I
K
A
V
A
L
E
L
F
L
TKGYQETS
L
S
D
I
I
K
L
S
G
G
S
Y
S
N
I
-
Y
D
G
F
----------
K
S
K
E
-
G
L
F
F
E
I
L
D
D
I
C
--
K
K
H
F
-
H
L
-
I
Y
S
K
----
T
--
Q
E
I
--
K
N
G
T
-------
L
K
--
E
I
L
-
T
S
-----------
F
G
L
A
F
-
I
E
------
I
F
---
N
Q
P
E
A
-
V
A
F
G
K
I
I
Y
S
Q
---
V
-
Y
--
D
-
K
D
-
R
H
L
A
N
W
I
E
N
N
Q
QNF
S
Y
N
I
L
M
G
F
F
K
Q
QNN
S
Y
M
K
K
N
A
E
K
L
A
V
L
F
C
T
M
L
K
E
P
Y
H
H
L
N
V
L
IN
A
P
L
K
N
K
K
E
Q
K
E
H
V
E
F
V
V
N
V
F
L
NGINS------------------
3
PsiBlast_PDB
47.00
27%
10
- C5 -
3MCX
5
?
A:
[331-399]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
V
Y
--
L
A
K
F
-
P
G
-
K
T
G
D
----
D
--
P
K
T
--
N
N
I
C
I
I
-----
R
L
S
E
V
Y
L
-
N
A
-----------
A
E
A
G
L
-
K
K
------
G
T
---
D
I
E
E
A
-
Q
G
Y
L
N
D
I
I
S
R
---
R
-
T
--
T
-
D
T
-
S
Q
Q
V
S
T
E
-----------------------------------------------------------------------------------------------
16
PsiBlast_PDB
46.12
40%
8
- C5 -
4FZO
-
?
A:
[2-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
-----------
L
D
C
R
E
-
R
I
------
E
K
---
D
L
E
D
L
-
E
K
E
L
M
E
M
K
S
I
---
K
-
L
--
S
-
D
D
-
E
E
A
V
V
E
R
-----------------------------------------------------------------------------------------------
36
Fugue
45.94
25%
51
- C3 -
2EHP
-
Y1627_AQUAE
A:
[3-126]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
F
-
T
H
E
G
K
-
V
E
G
V
P
G
N
-
Y
P
L
T
----
A
E
-
N
L
F
R
I
G
L
A
L
C
T
--
L
W
I
L
-
D
K
-
E
I
E
E
P
T
L
S
I
--
P
E
T
--
N
F
V
T
L
A
-----
L
S
--
V
G
F
M
N
A
G
G
S
V
N
V
GKGGD
I
K
L
F
L
-
Q
K
G
E
I
Y
--
V
L
---
E
F
Q
P
L
S
E
T
D
I
K
K
L
E
S
I
---
L
-
F
GR
A
-
P
I
-
P
K
K
T
G
E
D
I
G
S
F
K
C-----------------------------------------------------------------------------------------
35
Fugue
45.25
12%
-8
- C3 -
3CQB
4
HTPX_VIBPA
A:
[2-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
S
K
G
M
A
L
R
S
V
G
G
M
V
I
E
S
P
R
N
E
T
E
-
H
W
L
L
E
T
V
G
R
Q
A
--
Q
Q
A
G
-
I
G
M
P
T
V
A
----
I
Y
-
D
S
A
--
D
I
N
A
F
A
T
GAKD
S
L
--
V
A
V
-
S
T
-----------
G
L
L
H
N
M
T
R
------
D
E
---
A
E
A
V
L
-
A
H
E
V
S
H
I
A
N
G
---
D
M
V
--
T
M
T
L
M
Q
-----------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
44.70
40%
20
- C5 -
4FZP
1
?
A:
[2-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
-----------
L
D
C
R
E
-
R
I
------
E
K
---
D
L
E
D
L
-
E
K
E
L
M
E
M
K
S
I
---
K
-
L
--
S
-
D
D
-
E
E
A
V
V
E
R
-----------------------------------------------------------------------------------------------
39
Fugue
43.45
17%
21
- C3 -
2PFU
-
EXBD_ECOLI
A:
[43-141]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
V
K
V
N
L
P
A
S
T
S
-
T
P
Q
P
R
P
E
-
K
P
V
Y
L
S
V
K
A
D
-
N
S
M
F
I
G
N
D
P
V
T
--
D
E
T
M
-
I
T
-
A
L
N
A
----
L
--
T
E
G
--
K
K
D
T
----------------
T
-----------
I
F
F
R
A
-
D
K
------
T
V
---
D
Y
E
T
L
-
M
K
V
M
D
T
L
H
Q
A
---
G
-
Y
--
L
-
K
I
-
G
L
V
G
E
E
T
A
K
A
K-------------------------------------------------------------------------------------------
8
PsiBlast_PDB
43.05
44%
-23
- C5 -
3C7N
-
HSP7C_BOVIN
B:
[498-531]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-
N
K
I
T
I
T
N
D
K
G
-
R
L
S
K
E
D
I
E
R
M
V
Q
E
A
E
K
Y
-
K
A
-
E
D
E
K
----
Q
--
R
D
K
--
V
S
S
K
N
S
-----
L
E
--
S
Y
A
-
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------