@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01360: (2016-06-03 )
MGVKKEKGRKRFRKRKTFGNQILPLELLIEKNKREIINSAELMEEIYMKIDEKHTQCVTK
Atome Classification :
(19 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10.-.-...-..-.20....----....-----.30-.--..-..-..-.40.---..-.....50........60---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGV
K
K
E
K
G
R
-
K
R
F
-
R
-
K
R
K-TF-GN-QIL
P
----
L
E
L
L
-----
I
EK-
N
--
K
R
-
E
I
-
I
N
-
S
A
E
L
---
M
E
-
E
I
Y
M
K
ID
E
K
H
T
QCVTK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
78.14
31%
-10
- C7 -
3TO3
-
?
A:
[73-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
E
R
I
-
T
F
-
G
R
I
S
I
D
S
----
L
I
V
R
-----
V
Q
D
-
G
--
K
Q
-
E
I
-
Q
S
-
V
A
Q
F
---
L
E
-
E
V
F
R
V
V
N
V
E
Q
T
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
74.27
20%
-24
- C7 -
4QIK
10
RC3H1_HUMAN
A:
[4-313]
---------------------------------------------------------------------------------------------------------------------------GVE
D
T
K
H
Y
E
E
A
K
K
C
V
E
E
L
A
L
Y
L
KPLSSARGVGLNSTTQSVLS
R
P
M
Q
R
K
L
V
T
L
V
H
C
Q
L
V
E
E
E
G
R
-
I
R
A
M
R
-
A
A
R
-
S
L
-
G
E
-
R
T
V
T
-----
E
L
I
-----
L
Q
H
-
Q
---------
N
-
P
Q
Q
L
---
S
S
-
N
L
W
A
A
V
R
A
R
G
C
Q
F
L
G
P
A
M
Q
E
E
A
L
K
L
V
L
L
A
LEDG
S
A
L
S
R
K
V
L
V
L
F
V
V
Q
R
L
E
P
R
F
PQAS
K
T
S
I
G
H
V
V
Q
L
L
Y
R
A
SCFKS
L
M
Q
L
KEEFRT
Y
E
A
L
R
R
E
H
D
S
Q
I
V
Q
I
A
M
E
A
G
L
R
I
A
P
D
Q
W
S
S
L
L
YGDQSH
K
S
H
M
Q
S
I
I
D
K
L
QTPA
S
F
A
Q
S
V
Q
E
L
T
I
A
L
Q
R
T
GDPANLNRL
R
P
H
L
E
L
L
A
N
IDPSPDAPPPT
W
E
Q
L
E
N
G
L
V
A
V
R
T
V
V
H
G
L
V
D
Y
I
Q
N
H---------------------------------------
7
HHSearch
73.07
39%
-66
- C7 -
4C46
1
?
A:
[30-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
K
L
-----
I
E
A
-
N
--
D
R
-
E
I
-
N
L
-
V
P
A
S
---
I
K
-
Q
I
E
W
K
I
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
69.68
23%
-2
- C7 -
1G1J
1
NSP4_ROTS1
A:
[1-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
K
Q
M
D
R
V
V
-
K
E
M
-
R
-
R
Q
L
-
E
M
---------------------
I
D
K
-
L
--
T
T
-
R
E
-
I
E
-
Q
V
E
L
---
L
K
-
R
I
Y
D
K
L
T
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
68.29
15%
7
- C7 -
2W0C
1
P3_BPPM2
P:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
T
S
V
P
T
S
V
-
P
T
----
N
Q
S
-
V
W
-
G
N
-
V
S
T
G
----
L
D
A
L
-----
I
S
G
-
W
--
A
R
-
V
E
-
Q
I
-
K
A
A
K
---
A
S
-
T
G
Q
G
R
V
E
Q
A
M
T
P
E
L
D
N
GAAVVVE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
68.18
10%
-34
- C6 -
2LTL
-
NFU1_YEAST
A:
[1-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------MGHH
H
H
H
H
S
H
MNSQR
L
I
H
I
K
T
L
T
T
P
N
E
N
A
-
L
K
F
-
L
S
T
D
G
-
E
M
-
L
Q
-
T
R
G
S
----
K
S
I
V
-----
I
K
N
-
T
--
D
E
-
N
L
-
I
N
-
H
S
K
L
---
A
Q
-
Q
I
F
L
Q
C
P
G
V
E
S
L
M
I
G
D
D
F
L
T
I
N
K
D
RMVHW
N
S
I
K
P
E
I
I
D
L
L
T
K
Q
L
A
Y
GEDVISKE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
65.45
20%
18
- C5 -
4OY2
1
TAF1_YEAST
A:
[10-502]
NL
N
I
Q
H
S
Q
P
A
I
N
LQSPFYKVAVP
R
Y
Q
L
R
H
FHRENFGSHIRPG
T
K
I
V
F
S
K
L
K
A
RKRKRDKGKD
V
K
E
S
F
STSQDLTIGDTA
P
V
Y
L
M
E
Y
SEQTPV
A
L
S
K
F
G
M
A
N
K
LIN
Y
Y
R
K
ANEQDT
L
R
P
K
L
PV
G
E
T
H
V
L
G
VQDKSPFWNF
G
F
V
E
PG
H
I
V
P
T
L
Y
N
NM
I
R
A
P
V
F
K
H
D
I
SGT
D
F
L
L
T
K
S
S
G
F
G
I
S
N
R
F
Y
L
-
R
N
I
-
N
-
H
L
F
-
T
V
-
G
--
Q
T
F
P
----
V
E
E
I
-----
P
G
P
-
N
--
S
R
-
K
V
-
T
S
M
K
A
T
R
---
L
K
M
I
I
Y
R
I
L
N
H
N
H
S
K
A
I
S
I
D
P
I
A
K
H
F
PDQD
Y
G
Q
N
R
Q
K
V
K
E
F
M
K
Y
Q
RDGPEKG
L
W
R
L
KDD
E
K
L
L
D
N
E
A
V
K
S
LIT
P
E
Q
I
S
Q
V
E
S
M
S
Q
G
L
Q
F
Q
E
D
N
E
A
YNFD
S
K
L
K
S
L
E
E
N
L
L
P
W
N
I
T
K
N
F
I
N
S
T
Q
MRAMIQIHGVGDPTGCGEGFSF
L
K
T
S
M
KHS
Y
N
V
A
Q
Q
Q
K
A
Y
D
E
E
I
A
K
T
W
Y
T
H
T
K
S
L
S
ISNPFEEMTNPDEIN
Q
T
N
K
H
VKTDRDDK
K
I
L
K
I
V
R
K
K
RDENG
I
I
Q
R
Q
T
I
F
I
RD
P
R
V
I
Q
G
Y
I
K
I
K
E
Q
D
K
EDVN
18
Fugue
59.55
14%
38
* C7 *
2KVT
-
YAIA_ECOLI
A:
[1-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------M
P
T
K
P
PYPR
E
A
Y
I
V
T
I
E
K
G
K
P
G
-
Q
T
V
-
T
-
W
Y
Q
-
L
R
-
A
D
-
H
P
K
P
----
D
S
L
I
-----
S
E
H
P
T
--
A
Q
-
E
A
-
M
D
-
A
K
K
R
---
Y
E
-
D
P
D
K
E
L
E
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
57.99
17%
-48
- C7 -
3L2C
2
A:
[20-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
R
N
-
A
W
-
G
N
Q
S
----
Y
A
E
L
-----
I
------
S
Q
-
A
I
-
E
S
-
A
P
E
K
RLT
L
A
-
Q
I
Y
E
W
M
V
R
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
54.59
18%
49
* C6 *
4D5B
15
?
A:
[28-339]
---------------------A
F
D
E
S
F
F
S
F
G
G
H
V
G
T
S
V
E
Y
E
D
K
V
T
RGFNN
T
D
K
K
E
K
T
I
T
N
EV
F
N
F
F
Y
N
N
PQWN
F
M
G
F
Y
S
F
K
I
E
N
R
E
Q
K
E
PG
Y
Y
E
N
E
D
G
I
K
Q
L
F
S
L
N
K
G
H
D
LGNG
W
A
T
G
L
I
Y
E
L
E
Y
T
R
S
K
V
Y
S
PDVSG
L
R
K
N
L
A
E
H
S
I
R
P
Y
L
T
Y
W
N
NDYN
M
G
F
Y
S
N
L
E
Y
L
L
S
K
E
D
RNA
W
G
K
R
Q
E
Q
G
Y
S
A
L
F
-
K
-
P
Y
K
-
R
F
-
G
N
-
W
E
V
G
----
V
E
F
Y
-----
Y
Q
I
-
K
--
T
N
-
D
E
-
K
Q
-
P
D
G
T
---
I
N
-
E
K
S
D
F
N
E
R
Y
I
E
P
I
V
Q
Y
S
F
DD
A
G
T
L
Y
T
R
V
R
V
G
K
N
E
T
K
N
T
DRSGGGNAG
I
N
Y
F
K
D
I
R
K
A
T
V
G
Y
E
Q
S
I
G
ES
W
V
A
K
A
E
Y
E
Y
A
N
E
V
E
K
K
SRLSGWEARN
K
S
E
L
T
Q
H
T
F
Y
A
Q
A
L
Y
R
F-----------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
53.65
36%
-49
- C7 -
2K5C
-
?
A:
[17-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
K
----
W
E
E
L
I
E
E
M
L
I
I
E
-
N
--
F
E
-
E
I
-
V
K
-
D
R
E
R
---
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
53.43
14%
57
- C4 -
1JRF
1
RSVR_COTJA
A:
[1-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
R
C
P
P
G
Q
-
F
R
C
-
S
-
E
P
P
-
G
A
-
H
G
-
E
C
Y
P
----
Q
D
W
L
-----
C
D
G
-
H
--
P
D
-
C
D
-
D
G
-
R
D
E
-----------------
W
G
C
G
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
49.90
36%
-52
- C2 -
4HJB
-
?
C:
[1-14]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
M
K
-
Q
I
E
D
K
L
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
49.45
15%
34
- C7 -
1F02
-
?
T:
[271-336]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
Q
A
A
N
A
A
E
-
S
A
T
-
K
-
D
Q
L
-
T
Q
-
E
A
-
F
K
N
P
----
E
N
Q
K
-----
V
N
I
-
D
--
A
N
G
N
A
-
I
P
-
S
G
E
L
---
K
D
-
D
I
V
E
Q
I
A
Q
Q
A
K
E
A
G
E
V
ARQQA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
46.41
22%
111
- C3 -
3G1J
-
?
A:
[0-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------GVDRDYLQSEYGVLKAG
Q
C
Y
K
VV
R
S
F
R
D
Y
R
N
I
-
N
Y
E
-
R
-
G
D
V
M
R
F
L
G
S
-
N
F
V
P
YES
G
L
S
L
F
-----
F
D
K
-
N
G
S
E
R
-
Q
I
M
L
C
-
V
R
P
E
---
F
Q
M
E
I
A
H
H
L
D
S
Y
F
C
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.43
6%
-32
- C7 -
4ABX
-
RECN_DEIRA
A:
[307-322]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
-
D
P
E
A
---
L
D
-
R
V
E
A
R
L
S
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
42.17
17%
-22
- C7 -
2KW3
-
RFXAP_HUMAN
C:
[227-249]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
V
-----
L
N
Q
-
K
--
R
L
-
S
L
-
L
R
-
S
P
E
V
---
V
Q
-
F
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
38.23
40%
31
- C1 -
2WQ1
-
A:
[2-11]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-
Q
L
E
D
K
I
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.15
5%
17
- C7 -
3DT5
1
A:
[15-27]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
L
K
-
A
I
E
D
R
L
E
K
F
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------