@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv2875: (2016-05-14 )
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVVGTRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------.........10....---....20........30.....--------...40........50........60.....--...70....-....80.....--...90--.-.-..-....----100.......110...----..--.--.-----120-..----.......130--------....--....140.--------.-------.-....150.-.--.....----160...---------------.----...170.......180.......190...--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------MKVKNT
I
A
A
T
S
F
A
A
A
---
G
L
A
A
L
A
V
AVSPPAAAGDLVGP--------
G
C
A
E
YAAANPTGPASVQGMSQD
P
V
A
V
AASN--NP
E
L
T
T
L
T
A
-
A
LSGQLNPQ
V
N
--
L
V
D
TL--N-S-G
Q
-
Y
T
V
F
----APT
N
A
A
F
SKL
P
A
S
T
I
D
----
E
L--K--T-----
N
---
S
S
----
L
L
T
S
I
L
T
Y
-
H
--------VVAG--QTSPAN
V
V
--------G-------T-RQTLQG
A
S
-
V
--
T
V
TGQ----GN
S
L
K
V---------------G----NA
D
V
V
CGGVSTA
N
A
T
V
Y
M
I
D
S
VLM--PPA--------------------------------------------------------
36
Fugue
98.25
100%
-115
- C4 -
1NYO
-
MP70_MYCTU
A:
[1-163]
-------------------------------------------------------------------------------------------------------------------------------
G
D
L
V
G
P
--------
G
C
A
E
Y
A
A
A
N
P
T
G
P
A
S
V
Q
G
M
S
Q
D
P
V
A
V
A
A
S
N
--
N
P
E
L
T
T
L
T
A
-
A
L
S
G
Q
L
N
P
Q
V
N
--
L
V
D
T
L
--
N
-
S
-
G
Q
-
Y
T
V
F
----
A
P
T
N
A
A
F
S
K
L
P
A
S
T
I
D
----
E
L
--
K
--
T
-----
N
---
S
S
----
L
L
T
S
I
L
T
Y
-
H
--------
V
V
A
G
--
Q
T
S
P
A
N
V
V
--------
G
-------
T
-
R
Q
T
L
Q
G
A
S
-
V
--
T
V
T
G
Q
----
G
N
S
L
K
V
---------------
G
----
N
A
D
V
V
C
G
G
V
S
T
A
N
A
T
V
Y
M
I
D
S
V
L
M
--
P
P
A
--------------------------------------------------------
1
PsiBlast_PDB
98.25
100%
-115
- C4 -
1NYO
-
MP70_MYCTU
A:
[1-163]
-------------------------------------------------------------------------------------------------------------------------------
G
D
L
V
G
P
--------
G
C
A
E
Y
A
A
A
N
P
T
G
P
A
S
V
Q
G
M
S
Q
D
P
V
A
V
A
A
S
N
--
N
P
E
L
T
T
L
T
A
-
A
L
S
G
Q
L
N
P
Q
V
N
--
L
V
D
T
L
--
N
-
S
-
G
Q
-
Y
T
V
F
----
A
P
T
N
A
A
F
S
K
L
P
A
S
T
I
D
----
E
L
--
K
--
T
-----
N
---
S
S
----
L
L
T
S
I
L
T
Y
-
H
--------
V
V
A
G
--
Q
T
S
P
A
N
V
V
--------
G
-------
T
-
R
Q
T
L
Q
G
A
S
-
V
--
T
V
T
G
Q
----
G
N
S
L
K
V
---------------
G
----
N
A
D
V
V
C
G
G
V
S
T
A
N
A
T
V
Y
M
I
D
S
V
L
M
--
P
P
A
--------------------------------------------------------
27
HHSearch
97.82
100%
-115
- C4 -
1NYO
-
MP70_MYCTU
A:
[2-163]
--------------------------------------------------------------------------------------------------------------------------------
D
L
V
G
P
--------
G
C
A
E
Y
A
A
A
N
P
T
G
P
A
S
V
Q
G
M
S
Q
D
P
V
A
V
A
A
S
N
--
N
P
E
L
T
T
L
T
A
-
A
L
S
G
Q
L
N
P
Q
V
N
--
L
V
D
T
L
--
N
-
S
-
G
Q
-
Y
T
V
F
----
A
P
T
N
A
A
F
S
K
L
P
A
S
T
I
D
----
E
L
--
K
--
T
-----
N
---
S
S
----
L
L
T
S
I
L
T
Y
-
H
--------
V
V
A
G
--
Q
T
S
P
A
N
V
V
--------
G
-------
T
-
R
Q
T
L
Q
G
A
S
-
V
--
T
V
T
G
Q
----
G
N
S
L
K
V
---------------
G
----
N
A
D
V
V
C
G
G
V
S
T
A
N
A
T
V
Y
M
I
D
S
V
L
M
--
P
P
A
--------------------------------------------------------
28
HHSearch
72.97
30%
-112
* C4 *
2VXP
-
BGH3_HUMAN
A:
[503-632]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
V
M
D
V
L
K
G
--
D
N
R
F
S
M
L
V
A
-
A
I
Q
S
-----
A
G
--
L
T
E
T
L
--
N
-
R
-
E
G
V
Y
T
V
F
----
A
P
T
N
E
A
F
R
A
L
P
P
R
E
R
S
----
R
L
--
L
--
G
-----
D
---
A
K
----
E
L
A
N
I
L
K
Y
-
H
--------
I
G
D
E
--
I
L
V
S
G
G
I
G
AL------
V
-------
R
-
L
K
S
L
Q
G
D
K
-
L
--
E
V
S
L
K
----
N
N
V
V
S
V
---------------
N
----
K
E
P
V
A
E
P
D
I
M
A
T
N
G
V
V
H
V
I
T
N
V
L
--------------------------------------------------------------
30
HHSearch
68.36
40%
-102
- C4 -
1W7D
-
?
A:
[22-157]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
D
I
V
E
T
A
T
G
--
A
G
S
F
T
T
L
L
T
-
A
A
E
A
-----
A
G
--
L
V
D
T
L
--
K
-
G
-
D
G
P
F
T
V
F
----
A
P
T
D
A
A
F
A
A
L
P
E
G
T
V
E
----
D
L
--
L
KP
E
-----
N
---
K
E
----
K
L
T
E
I
L
T
Y
-
H
--------
V
V
P
G
--
E
V
M
S
S
D
L
T
E
G
------
M
-------
T
-
A
E
T
V
E
G
G
A
-
L
--
T
V
T
L
E
----
G
-
G
P
K
V
---------------
N
----
G
V
S
I
S
Q
P
D
V
D
A
S
N
G
V
I
H
V
I
D
G
V
L
M
--
P
G
A
--------------------------------------------------------
29
HHSearch
68.33
36%
-105
- C4 -
2MXA
-
?
A:
[2-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
I
V
D
I
A
V
N
--
T
P
G
F
S
T
L
V
T
-
A
V
K
V
-----
A
N
--
L
V
E
A
L
--
Q
-
S
-
P
G
P
F
T
V
F
----
A
P
N
D
D
A
F
A
K
L
P
D
G
T
I
T
----
S
L
--
V
--
Q
-----
N
---
P
P
----
Q
L
G
R
I
L
K
Y
-
H
--------
V
V
A
G
--
A
Y
K
A
T
D
L
K
--------
R
M
G-----
I
-
V
T
S
L
E
G
S
T
-
I
--
P
I
H
G
D
-----
N
P
L
E
V
---------------
K
----
N
A
T
V
L
A
A
D
I
E
A
E
N
G
I
I
H
V
I
D
T
V
---------------------------------------------------------------
8
PsiBlast_PDB
67.38
33%
-111
- C4 -
2VXP
-
BGH3_HUMAN
A:
[527-632]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
T
L
--
N
R
E
-
G
V
-
Y
T
V
F
----
A
P
T
N
E
A
F
R
A
L
P
P
R
E
R
S
----
R
L
--
L
--
G
-----
D
---
A
K
----
E
L
A
N
I
L
K
Y
-
H
---------
I
G
D
--
E
I
L
V
S
G
G
I
--------
G
ALV----
R
-
L
K
S
L
Q
G
D
K
-
L
--
E
V
S
L
K
----
N
N
V
V
S
V
---------------
N
----
K
E
P
V
A
E
P
D
I
M
A
T
N
G
V
V
H
V
I
T
N
V
L
--------------------------------------------------------------
31
HHSearch
67.27
21%
-114
- C4 -
1O70
2
A:
[19-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
N
G
A
L
R
K
F
Y
E
-
V
I
M
D
-----
N
G
G
A
V
L
D
D
I
--
N
-
S
-
L
T
E
V
T
I
L
----
A
P
S
N
E
A
W
N
S
S
N
I
N
N
-------
V
--
L
--
R
-----
D
---
R
N
----
K
M
R
Q
I
L
N
M
-
H
--------
I
I
K
D
--
R
L
N
V
D
K
I
R
--------
Q
K
N
ANLIA
Q
-
V
P
T
V
N
N
N
T
F
L
--
Y
F
N
V
R
G
EGS
D
T
V
I
T
V
---------------
E
G
GG
V
N
A
T
V
I
Q
A
D
V
A
Q
T
N
G
Y
V
H
I
I
D
H
V
L
G
--
V
P
---------------------------------------------------------
4
PsiBlast_PDB
66.18
37%
-96
- C4 -
2MXA
-
?
A:
[8-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
N
--
T
P
G
F
S
T
L
V
T
-
A
V
K
-----
V
A
N
--
L
V
E
A
L
--
Q
-
S
P
G
P
-
F
T
V
F
----
A
P
N
D
D
A
F
A
K
L
P
D
G
T
I
T
----
S
L
--
V
--
Q
-----
N
---
P
P
----
Q
L
G
R
I
L
K
Y
-
H
--------
V
V
A
G
AY
K
A
T
D
L
K
R
M
--------
G
-------
I
-
V
T
S
L
E
G
S
T
-
I
--
P
I
H
G
D
-----
N
P
L
E
V
---------------
K
----
N
A
T
V
L
A
A
D
I
E
A
E
N
G
I
I
H
V
I
D
T
V
---------------------------------------------------------------
6
PsiBlast_PDB
65.85
33%
-109
- C4 -
2LTB
-
BGH3_HUMAN
A:
[527-634]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
T
L
--
N
R
E
-
G
V
-
Y
T
V
F
----
A
P
T
N
E
A
F
R
A
L
P
P
R
E
R
S
----
R
L
--
L
--
G
-----
D
---
A
K
----
E
L
A
N
I
L
K
Y
-
H
---------
I
G
D
--
E
I
L
V
S
G
G
I
--------
G
ALV----
R
-
L
K
S
L
Q
G
D
K
-
L
--
E
V
S
L
K
----
N
N
V
V
S
V
---------------
N
----
K
E
P
V
A
E
P
D
I
M
A
T
N
G
V
V
H
V
I
T
N
V
L
Q
--
P
----------------------------------------------------------
7
PsiBlast_PDB
65.76
33%
-106
- C4 -
2LTC
-
BGH3_HUMAN
A:
[527-632]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
T
L
--
N
R
E
-
G
V
-
Y
T
V
F
----
A
P
T
N
E
A
F
R
A
L
P
P
R
E
W
S
----
R
L
--
L
--
G
-----
D
---
A
K
----
E
L
A
N
I
L
K
Y
-
H
---------
I
G
D
--
E
I
L
V
S
G
G
I
--------
G
A
L
V
----
R
-
L
K
S
L
Q
G
D
K
-
L
--
E
V
S
L
K
----
N
N
V
V
S
V
---------------
N
----
K
E
P
V
A
E
P
D
I
M
A
T
N
G
V
V
H
V
I
T
N
V
L
--------------------------------------------------------------
5
PsiBlast_PDB
65.66
33%
-104
- C4 -
1X3B
-
A:
[33-140]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
T
L
--
N
R
E
-
G
V
-
Y
T
V
F
----
A
P
T
N
E
A
F
R
A
L
P
P
R
E
R
S
----
R
L
--
L
--
G
-----
D
---
A
K
----
E
L
A
N
I
L
K
Y
-
H
---------
I
G
D
--
E
I
L
V
S
G
G
I
--------
G
A
L
V
----
R
-
L
K
S
L
Q
G
D
K
-
L
--
E
V
S
L
K
----
N
N
V
V
S
V
---------------
N
----
K
E
P
V
A
E
P
D
I
M
A
T
N
G
V
V
H
V
I
T
N
V
L
Q
--
P
----------------------------------------------------------
3
PsiBlast_PDB
65.00
42%
-104
- C4 -
1W7D
-
?
A:
[47-157]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
T
L
--
K
G
D
-
G
P
-
F
T
V
F
----
A
P
T
D
A
A
F
A
A
L
P
E
G
T
V
E
----
D
L
L
K
P
--
E
-----
N
---
K
E
----
K
L
T
E
I
L
T
Y
-
H
--------
V
V
P
G
--
E
V
M
S
S
D
L
T
--------
E
G
M
-----
T
-
A
E
T
V
E
G
G
A
-
L
--
T
V
T
L
E
----
G
G
P
-
K
V
---------------
N
----
G
V
S
I
S
Q
P
D
V
D
A
S
N
G
V
I
H
V
I
D
G
V
L
M
--
P
G
A
--------------------------------------------------------
32
HHSearch
63.71
17%
-105
- C4 -
1O70
4
A:
[157-311]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
T
T
V
L
G
K
L
E
S
--
D
P
M
M
S
D
T
Y
K
-
M
G
K
F
-----
S
H
--
F
N
D
Q
L
--
N
-
N
T
Q
R
R
F
T
Y
F
----
V
P
R
D
K
G
W
Q
K
T
E
L
D
Y
P
S
A
H
K
K
L
F
--
M
A-
D
-----
F
---
S
Y
----
H
S
K
S
I
L
E
R
-
H
--------
L
A
I
S
D
K
E
Y
T
M
K
D
L
V
K
F
S
Q
ESG
S
V
-------
I
-
L
P
T
F
-
R
D
S
-
L
--
S
I
R
V
E
E
E
--
A
G
R
Y
V
I
I
W
NY-----------
K
----
K
I
N
V
Y
R
P
D
V
E
C
T
N
G
I
I
H
V
I
D
Y
P
L
L
--
E
E
K
--------------------------------------------------------
2
PsiBlast_PDB
63.54
42%
-108
- C4 -
1W7E
-
?
A:
[47-156]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
T
L
--
K
G
D
-
G
P
-
F
T
V
F
----
A
P
T
D
A
A
F
A
A
L
P
E
G
T
V
E
----
D
L
L
K
P
--
E
-----
N
---
K
E
----
K
L
T
E
I
L
T
Y
-
H
--------
V
V
P
G
--
E
V
M
S
S
D
L
T
--------
E
G
M
-----
T
-
A
E
T
V
E
G
G
A
-
L
--
T
V
T
L
E
----
G
G
P
-
K
V
---------------
N
----
G
V
S
I
S
Q
P
D
V
D
A
S
N
G
V
I
H
V
I
D
G
V
L
M
--
P
G
---------------------------------------------------------
37
Fugue
55.92
17%
-88
- C4 -
1O70
5
A:
[19-314]
A
E
N
G
A
L
R
K
F
Y
E
V
I
M
D
N
GG
A
V
L
D
D
I
N
S
LT
E
V
T
I
LAPS
N
E
A
W
N
SSNINNVLRD
R
N
K
M
R
Q
I
L
N
M
H
IIK
D
R
L
N
V
D
K
I
R
Q
K
N
ANLIAQVPTVNNN
T
F
L
Y
F
N
V
R
G
E
G
S
D
T
V
I
T
V
E
---
G
G
G
V
N
A
T
V
I
Q
A
----
D
V
A
Q
T
N
--------
G
Y
V
H
I
I
D
-------
H
V
L
G
V
P
Y
T
T
V
L
G
K
L
E
S
--
D
P
M
M
S
D
T
Y
K
-
M
G
-----
K
F
S
H
--
F
N
D
Q
L
NN
T
-
Q
-
R
R
-
F
T
Y
F
----
V
P
R
D
K
G
W
Q
K
T
E
L
D
Y
P
S
----
A
H
--
K
--
K
L
F
MAD
F
---
S
Y
----
H
S
K
S
I
L
E
R
-
H
--------
L
A
I
S
--
D
K
E
Y
T
M
K
D
--------
L
-------
V
-
K
F
S
Q
E
S
G
S
-
V
--
I
L
P
T
F
----
R
D
S
L
S
I
R
V
E
E
E
AG
R
Y
V
I
I
W
NY
K
----
K
I
N
V
Y
R
P
D
V
E
C
T
N
G
I
I
H
V
I
D
Y
P
L
L
--
E
E
K
DVV-----------------------------------------------------
43
Fugue
52.90
20%
-44
- C3 -
3B21
-
?
A:
[21-212]
-----------------------------------------------------------------------------------------------
N
V
N
V
K
K
L
L
E
S
L
N
S
K
---
S
L
G
D
M
D
K
D
S
E
L
A
A
T
L
Q
K
M
I
N
P
SGGDGNC
S
G
C
A
L
H
A
C
M
A
M
L
G
Y
----
G
V
R
E
A
P
V
P
N
E
I
S
E
------------
Y
M
T
G
F
F
H
R
H
L
E
--
Q
I
D
S
E
--
G
--------
I
V
----
S
H
P
N
E
T
Y
S
K
F
R
E
R
I
A
E
----
N
I
--
L
--
Q
-----
N
---
T
S
KG
S
V
V
M
I
S
I
E
Q
A
T
H
--------
W
I
A
G
--
F
N
D
G
E
K
I
M
--------
F
-------
L
D
V
Q
T
G
K
G
F
N
-
L
YD
P
V
E
K
S
----
P
D
A
F
V
D
---------------
E
----
N
S
S
V
Q
V
I
H
V
S
D
Q
E
F
D
H
Y
A
N
S
S
S
W
K
S
K
R
L
C
--------------------------------------------------------
42
Fugue
42.06
15%
-50
- C3 -
2HY1
3
CPDA_MYCTU
A:
[12-267]
----------------------------------------------------------------------------------PRPD
Y
V
L
L
H
I
S
D
T
H
L
I
D
A
D
D
R
L
G
E
L
L
E
---
Q
L
N
Q
S
G
L
R
P
D
A
I
V
F
T
G
D
L
A
D
K
--------
G
E
P
A
A
Y
R
K
L
R
G
L
V
E
P
F
A
A
Q
L
G
A
E
L
V
W
V
M
G
N
--
H
D
D
R
A
E
L
R
K
-
F
L
L
D
E
A
P
S
M
A
P
--
L
D
R
V
C
--
M
-
I
-
D
G
-
L
R
I
I
V
L
D
T
S
V
P
G
H
H
H
G
E
I
R
A
S
Q
L
G
----
W
L
--
A
--
E
-----
E
L
AT
P
A
----
P
D
G
T
I
L
A
L
-
H
HPPIPSVL
D
M
A
V
--
T
V
E
L
R
D
Q
A
--------
A
-------
L
-
G
R
V
L
R
G
T
D
-
V
--
R
A
I
L
A
----
G
H
L
H
Y
S
---------------
T
----
N
A
T
F
V
G
I
P
V
S
V
A
S
A
T
C
G
C
N
L
V
H
V
Y
--
P
D
T
V
V
H
S
V
I
P-------------------------------------------------
38
Fugue
40.93
10%
-68
- C3 -
1RI5
-
MCES_ENCCU
A:
[41-292]
----------------------------------------------------------------------------------------SKT
I
N
I
R
N
A
N
N
F
I
K
A
C
L
I
R
L
Y
TKR
G
D
S
V
L
D
L
G
C
G
K
G
G
D
L
L
K
Y
E
R
A
--------
G
I
G
E
Y
Y
G
V
D
I
A
-
E
V
S
I
N
D
A
R
V
R
A
R
N
M
K
R
R
F
--
K
V
F
F
R
A
Q
D
S
Y
G
R
H
M
D
L
G
K
E
F
D
--
V
I
S
S
Q
--
F
-
S
----
F
H
Y
A
----
F
S
T
S
E
S
L
D
I
A
Q
R
N
I
A
R
----
H
L
--
R
--
P
-----
G
---
G
Y
----
F
I
M
T
V
P
S
R
-
D
--------
V
I
L
E
--
R
Y
K
Q
G
R
M
S
--------
N
-------
D
-
F
Y
K
I
E
L
E
K
------
M
E
D
----
V
P
M
E
S
V
---------------
R
----
E
Y
R
F
T
L
L
D
-
S
V
N
N
C
I
E
Y
F
V
D
F
T
R
M
--
V
D
G
F
K
R
L
GLSLV
E
R
K
G
F
I
D
F
Y
E
D
E
G
R
R
N
PELSKKMGLGCLT
R
E
E
S
E
V
V
G
I
Y
E
V
V
V
F
R
K
L
45
Fugue
36.80
15%
-33
* C3 *
2N2T
-
?
A:
[1-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
Q
W
Q
I
K
I
Y
S
E
N
--
E
R
E
F
R
E
L
I
E
-
R
L
E
E
E
-
R
P
S
V
Q
--
Y
T
E
T
T
--
R
-
N
-
G
R
-
R
Q
L
T
----
I
R
S
N
D
K
N
E
V
D
R
I
L
E
E
V
----
R
R
--
K
--
V
-----
P
---
N
A
----
R
V
R
E
T
E
T
G
-
S
--------
L
E
H
H
--
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------