@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1036: (2016-01-26 )
MSRFEIAFSGQLVAGARPEVVKANLAKLFQADAQRIELLFSGRRVVIKNNLDAASAEKYRSVLERAGAIAVVAEMEVEEVVMAPPPAQTTPVEAPQTRAATGTSAPAGRLQVAPRDGYMAAFAEVDAPDFGLAPVGADLQDAKAEAEAPKLDLSRFSVAPVGSDMGQARSEPAAPAPDTSHLRLQD
Atome Classification :
(20 SA)
-----------------------.........10..-.....----..20--.......--..30........40----.-----.---..---.....50----.--.......60...------.------------------------------------------.------...70.......---------.80...----------------.....90........100--.......----..110---...---...-----.120......-----.130....----.....140..----.-....150.......160----.---........170.----......180....------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------M
S
R
F
E
I
A
FSG-QL-VAGAR----
P
E
V
---
V
K
A
N
L
A
K
--
L
F
Q
A
D
A
Q
R
I
E
L
L
F-----S-----G---
R
R
---
V
V
I
KNNL----D--A
A
S
A
E
K
Y
R
S
V
L
E
------R------------------------------------------A------G
A
I
A
V
V
A
E
M
E
V
E
---------
E
VVMAP----------------PPAQTTPVEAPQTRAA----TGTSAPA----G
R
L
Q
V---APR---DG
Y
-----
M
A
A
F
AEVDAP-----DF--GLAP----VGAD
L
Q
DAKA----E-AEAPKLD
L
S
RFSVAP------V---GSDMGQARSEPA----APAPDTS
H
L
RLQD------------------------
57
Fugue
62.99
23%
48
* C7 *
3DU1
-
?
X:
[0-236]
---HMNVGEILRHYAAGKRNFQH
I
N
L
Q
E
I
E
L
T
N
-
A
S
-
L
T
G
A
D
----
L
S
Y
---
A
D
L
R
Q
T
R
--
L
G
K
S
N
F
S
H
T
C
L
R
E
-----
A
-----
D
---
L
S
---
E
A
I
L
W
G
I
----
D
--
L
S
E
A
D
L
Y
R
A
I
L
R
------
E
------------------------------------------
A
DLT---
G
A
K
L
V
K
T
R
L
E
E
A
---------
N
L
I
K
A
S
LCGANLNSANLSRCLL
F
Q
A
D
L
R
P
S
S
N
Q
R
T
D
L
G
YVLL
T
G
A
D
L
S
Y
----
A
D
L
R
A
---
A
S
L
---
H
H
A
-----
N
L
D
G
A
K
L
C
R
A
-----
N
F
--
G
R
T
I
QWGN
L
A
A
D
L
S
G
A
S
L
----
Q
G
A
D
L
S
Y
A
N
L
E
S
A
I
L
R
K
------
A
NLQ
G
A
D
L
T
G
A
I
L
K
D
A
ELKG
A
I
M
P
D
G
S
I
H
----------------------------
21
HHSearch
62.30
17%
-101
* C6 *
1CTF
1
RL7_ECOLI
A:
[7-74]
-------------------------
E
F
D
V
I
L
K
A
-
A
---
G
A
-
N
----
K
V
A
---
V
I
K
A
V
R
G
--
A
T
G
L
G
L
K
E
A
K
D
L
V
-----
E
-----
S
---
A
P
---
A
A
L
K
E
G
V
----
S
--
K
D
D
A
E
A
L
K
K
A
L
E
------
E
------------------------------------------
A
------
G
A
E
V
E
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
59.21
18%
-82
- C6 -
3O1F
-
CLPS_ECOLI
A:
[27-105]
-------------------------
M
Y
K
V
I
L
V
N
-
D
---
D
Y
T
P
----
M
E
F
---
V
I
D
V
L
Q
K
--
F
F
S
Y
D
V
E
R
A
T
Q
L
M
L
A
V
H
Y
Q
-----
G
---
K
A
---
I
C
G
V
-
F
-----
T
--
A
E
V
A
E
T
K
V
A
-
V
N
------
K
------------------------------------------
Y
A
R
E
N
EH
P
L
L
C
T
L
E
K
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
58.54
19%
-69
- C6 -
2W9R
1
CLPS_ECOLI
A:
[26-106]
------------------------
S
M
Y
K
V
I
L
V
N
-
D
---
D
Y
T
P
----
M
E
F
---
V
I
D
V
L
Q
K
--
F
F
S
Y
D
V
E
R
A
T
Q
L
M
-----
L
A
V
H
Y
Q
G
---
K
A
---
I
C
G
V
F
------
T
--
A
E
V
A
E
T
K
V
A
M
V
N
K
Y
A
R
E
N
E
------------------------------------------
H
------
P
L
L
C
T
L
E
K
A
G
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
57.48
19%
-97
- C6 -
1DD3
-
RL7_THEMA
A:
[58-128]
-------------------------
E
F
D
V
V
L
K
S
-
F
--
G
-
Q
-
N
----
K
I
Q
---
V
I
K
V
V
R
E
--
I
T
G
L
G
L
K
E
A
K
D
L
V
-----
E
-----
K
---
A
G
SPD
A
V
I
K
S
G
V
----
S
--
K
E
E
A
E
E
I
K
K
K
L
E
------
E
------------------------------------------
A
------
G
A
E
V
E
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
56.69
16%
-35
- C2 -
4LL1
-
TXNIP_HUMAN
A:
[5-296]
-----------------------
I
K
S
F
E
V
V
F
N
D
P
E
K
-
V
Y
G
S
G
----
E
K
V
A
G
R
V
I
V
E
V
C
E
--
V
T
R
V
K
A
V
R
I
L
A
C
G
-----
V
-----
A
---
K
V
---
L
W
M
Q
G
S
Q
----
Q
--
C
K
Q
T
S
E
Y
L
R
Y
E
D
------
T
L
L
L
EDQPTGEN
E
M
V
I
M
R
P
G
N
K
Y
E
Y
K
F
G
F
E
L
P
Q
G
PLGTSFKGK
Y
------
G
S
V
D
Y
W
V
K
A
F
L
D
R
P
SQP
T
Q
E
T
K
K
N
F
E
V
----------------
V
P
D
L
M
A
P
V
S
A
K
K
E
K
K
V
----
S
S
M
F
I
P
D
----
G
R
V
S
V
---
S
A
R
I
DR
K
G
F
CEGDE
I
S
I
H
A
D
F
E
N
T
SS
R
I
V
V
P
--
K
A
A
I
----
V
A
R
H
T
Y
L
A
N
G
----
Q
-
T
K
V
L
T
Q
K
L
S
S
V
R
G
N
H
------
I
---
I
S
G
T
C
A
S
W
R
G
K
S
----
L
R
V
Q
K
I
N
I
L
R
V
E
Y
S
L
L
I
Y
V
S
V
P
GSKKV
I
L
D
L
P
L
V
I
G
S
54
Fugue
56.34
17%
-28
- C5 -
1B63
4
MUTL_ECOLI
A:
[3-218]
---------------------MP
I
Q
V
L
P
P
Q
L
A
N
-
Q
I
-
A
A
G
E
V
V
ER
P
A
S
V
---
V
K
E
L
V
E
N
--
S
L
D
A
G
A
T
R
I
D
I
D
I
-----
E
-----
R
GGA
K
L
---
I
R
I
R
D
N
G
----
C
--
G
I
K
K
D
E
L
A
L
A
L
A
------
R
------------------------------------------
H
------
A
T
S
K
I
A
S
L
D
D
L
E
A
IISLGFRG
E
A
L
A
S
I
----------------
S
S
V
S
R
L
T
L
T
S
R
T
A
E
Q
Q
----
E
A
W
Q
A
Y
A
E
G
RD
M
N
V
T
V
---
K
P
A
---
A
H
P
-----
V
G
T
T
L
E
V
L
D
L
-----
F
Y
--
N
T
P
A
----
R
R
K
F
L
R
T
E
K
T
----
E
-
F
N
H
I
D
E
I
I
R
R
I
A
L
A
R
FD
V
T
I
N
L
---
S
H
N
G
K
I
V
R
Q
Y
R
A
----
V
P
E
G
G
Q
K
E
R
R
L
G
A
I
C----------------------
59
Fugue
55.65
17%
-12
- C3 -
4J1J
2
?
A:
[3-235]
TGPD
F
I
Y
D
DRPAAVSSTFN
P
E
K
G
Y
M
D
F
I
T
A
Y
G
K
-
N
I
N
A
D
N
V
R
----
I
F
F
---
L
N
H
K
K
A
K
D
S
L
K
G
S
P
K
V
E
V
D
L
Q
F
-----
G
-----
T
---
L
R
---
V
K
V
V
N
N
H
NPRN
R
--
D
N
P
V
A
D
N
A
I
T
L
H
------
R
------------------------------------------
L
------
S
G
Y
L
A
K
W
C
F
D
E
I
---------
D
H
G
Q
I
E
----------------
E
A
E
V
K
S
K
V
V
I
P
L
A
E
A
K
----
G
C
K
W
G
D
G
----
V
A
L
Y
L
---
A
F
A
---
P
G
----------
A
E
M
F
L
K
-----
D
F
--
E
F
Y
P
----
L
A
I
D
I
Q
R
V
V
K
DGMD
I
-
T
F
M
R
K
V
L
K
Q
R
Y
G
T
K
T
------
A
---
D
D
W
M
I
S
E
V
T
A
I
Q
----
S
A
V
K
V
V
A
K
L
P
W
A
K
AGFT
A
A
A
K
N
F
L
A
K
F
NISV------
58
Fugue
52.85
11%
-21
- C7 -
1HF2
-
MINC_THEMA
A:
[1-206]
-----------------------
M
V
D
F
K
M
T
K
E
G
-
L
V
-
L
L
I
K
D
----
Y
Q
N
---
L
E
E
V
L
N
A
--
I
S
A
R
I
T
Q
M
G
G
F
F
A
-----
K
-----
G
---
D
R
---
I
S
L
M
I
E
N
----
H
--
N
K
H
S
Q
D
I
P
R
I
V
S
------
H
------------------------------------------
L
------
R
N
L
G
L
E
V
S
Q
I
L
V
---------
G
K
V
Q
S
R
----------------
T
T
V
E
S
T
G
K
V
I
K
R
N
I
R
S
----
G
Q
T
V
V
H
S
----
G
D
V
I
V
F
G
N
V
N
K
---
G
A
E
-----
I
L
A
G
G
S
V
V
V
F
-----
G
K
AQ
G
N
I
R
----
A
G
L
N
-
E
G
G
Q
A
----
V
-
V
A
A
L
D
L
Q
T
S
L
I
Q
I
A
G
------
F
---
I
T
H
S
K
G
E
E
N
V
P
S
----
I
A
H
V
K
G
N
R
I
V
I
E
P
FDKVSF------------------
33
HHSearch
51.40
15%
-80
- C6 -
2QIF
7
COPZ_BACSU
A:
[1-68]
-----------------------
M
E
Q
K
T
L
Q
V
E
G
--
M
-
S
C
Q
H
C
----
V
K
A
---
V
E
T
S
V
G
E
--
L
D
G
V
S
A
V
H
V
N
--
L
-----
E
-----
A
---
G
K
---
V
D
V
S
F
D
A
----
D
--
K
V
S
V
K
D
I
A
D
A
I
E
------
D
------------------------------------------
Q
------
G
Y
D
V
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
46.35
36%
-117
- C6 -
4YG2
-
RPOB_ECOLI
C:
[306-344]
-------------------------------
T
G
-
E
L
-
I
C
A
A
N
----
M
E
L
---
S
L
D
L
L
A
K
--
L
S
Q
S
G
H
K
R
I
E
T
L
F
-----
T
------------------
N
D
L
----
D
--
H
G
P
Y
I
S
E
T
L
R
V
D
------
P
------------------------------------------
T
------
N
D
R
L
S
A
L
V
E
I
Y
R
---------
M
M
R
P
G
E
----------------
P
P
T
R
E
A
A
E
S
L
F
E
N
L
F
F
----
S
E
D
R
Y
D
L
----
S
A
V
G
R
---
M
K
F
---
N
R
S
-----
L
L
R
E
E
I
E
G
S
G
-----
I
L
--
S
K
D
D
----
I
I
D
V
M
K
K
L
I
D
----
I
-
R
N
G
K
G
E
V
D
D
I
D
H
L
G
N
------
R
---
R
I
R
S
V
G
E
M
A
E
N
Q
----
F
R
V
G
L
V
R
V
E
R
A
V
K
------------------------
14
PsiBlast_PDB
45.89
36%
-120
- C6 -
4YFK
-
RPOB_ECO24
C:
[306-344]
-------------------------------
T
G
-
E
L
-
I
C
A
A
N
----
M
E
L
---
S
L
D
L
L
A
K
--
L
S
Q
S
G
H
K
R
I
E
T
L
F
-----
T
------------------
N
D
L
----
D
--
H
G
P
Y
I
S
E
T
L
R
V
D
------
P
------------------------------------------
T
------
N
D
R
L
S
A
L
V
E
I
Y
R
---------
M
M
R
P
G
E
----------------
P
P
T
R
E
A
A
E
S
L
F
E
N
L
F
F
----
S
E
D
R
Y
D
L
----
S
A
V
G
R
---
M
K
F
---
N
R
S
-----
L
L
R
E
E
I
E
G
S
G
-----
I
L
--
S
K
D
D
----
I
I
D
V
M
K
K
L
I
D
----
I
-
R
N
G
K
G
E
V
D
D
I
D
H
L
G
N
------
R
---
R
I
R
S
V
G
E
M
A
E
N
Q
----
F
R
V
G
L
V
R
V
E
R
A
V
K
------------------------
62
Fugue
45.87
15%
2
- C4 -
4N0H
-
GATF_YEAST
F:
[6-153]
-----------------------------------------------------
G
A
K
I
G
K
--
K
F
E
N
M
N
Q
I
R
D
Y
L
S
-----
R
-----
P
---
V
W
---
S
V
H
E
Y
L
G
----
E
--
P
P
S
A
E
A
V
K
K
L
L
R
------
L
------------------------------------------
S
------
G
-------------------------------------------------------
L
P
L
----
E
G
A
D
I
K
E
----
I
Q
M
R
L
---
A
K
Q
---
L
S
F
-----
I
N
K
L
H
N
I
P
V
E
-----
N
------
T
----
K
Q
L
N
Y
T
K
L
L
E
----
G
-
I
S
H
Q
K
Q
D
------
A
E
------
L
---
G
E
V
S
G
S
W
K
A
T
G
L
----
A
A
E
S
K
N
A
Y
F
V
V
K
E
------------------------
10
PsiBlast_PDB
45.78
36%
-121
- C6 -
4LK1
-
?
C:
[306-344]
-------------------------------
T
G
-
E
L
-
I
C
A
A
N
----
M
E
L
---
S
L
D
L
L
A
K
--
L
S
Q
S
G
H
K
R
I
E
T
L
F
-----
T
------------------
N
D
L
----
D
--
H
G
P
Y
I
S
E
T
L
R
V
D
------
P
------------------------------------------
T
------
N
D
R
L
S
A
L
V
E
I
Y
R
---------
M
M
R
P
G
E
----------------
P
P
T
R
E
A
A
E
S
L
F
E
N
L
F
F
----
S
E
D
R
Y
D
L
----
S
A
V
G
R
---
M
K
F
---
N
R
S
-----
L
L
R
E
E
I
E
G
S
G
-----
I
L
--
S
K
D
D
----
I
I
D
V
M
K
K
L
I
D
----
I
-
R
N
G
K
G
E
V
D
D
I
D
H
L
G
N
------
R
---
R
I
R
S
V
G
E
M
A
E
N
Q
----
F
R
V
G
L
V
R
V
E
R
A
V
K
------------------------
18
PsiBlast_PDB
45.52
36%
-100
- C6 -
4YLN
-
RPOB_ECOLI
C:
[306-344]
-------------------------------
T
G
-
E
L
-
I
C
A
A
N
----
M
E
L
---
S
L
D
L
L
A
K
--
L
S
Q
S
G
H
K
R
I
E
T
L
F
-----
T
------------------
N
D
L
----
D
--
H
G
P
Y
I
S
E
T
L
R
V
D
------
P
------------------------------------------
T
------
N
D
R
L
S
A
L
V
E
I
Y
R
---------
M
M
R
P
G
E
----------------
P
P
T
R
E
A
A
E
S
L
F
E
N
L
F
F
----
S
E
D
R
Y
D
L
----
S
A
V
G
R
---
M
K
F
---
N
R
S
-----
L
L
R
E
E
I
E
G
S
G
-----
I
L
--
S
K
D
D
----
I
I
D
V
M
K
K
L
I
D
----
I
-
R
N
G
K
G
E
V
D
D
I
D
H
L
G
N
------
R
---
R
I
R
S
V
G
E
M
A
E
N
Q
----
F
R
V
G
L
V
R
V
E
R
A
V
K
------------------------
31
HHSearch
45.43
16%
-53
- C6 -
1AW0
-
A:
[2-70]
-----------------------
T
Q
E
T
V
I
N
I
D
G
-
M
--
T
C
N
S
C
----
V
Q
S
---
I
E
G
V
I
S
K
--
K
P
G
V
K
S
I
R
V
S
L
-------
A
-----
N
---
S
N
---
G
T
V
E
Y
D
P
----
L
--
L
T
S
P
E
T
L
R
G
A
I
E
------
D
------------------------------------------
M
------
G
F
D
A
T
L
S
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
HHSearch
45.33
9%
-103
- C6 -
3PBT
-
?
A:
[38-97]
-------------------------
V
T
T
L
W
A
N
P
-
K
E
-
L
M
--
T
----
A
K
E
---
R
W
P
Q
L
A
A
--
A
L
G
Q
D
T
K
L
F
A
D
R
I
E
Q
N
A
-
E
-----
R
---
E
F
---
I
Y
L
V
R
G
L
----
T
--
P
E
Q
G
E
G
V
I
A
L
K
V
------
P
------------------------------------------
G
------
V
Y
S
I
E
E
F
R
R
F
Y
P
---------
A
G
E
V
V
A
----------------
H
A
V
G
F
T
D
V
D
D
R
G
R
E
G
I
----
E
L
A
F
D
E
W
----
L
A
G
V
P
---
G
K
R
---
Q
V
L
-----
K
D
R
R
G
R
V
I
K
D
-----
V
Q
--
V
T
K
N
----
A
K
P
G
K
T
L
A
L
S
----
I
-
D
L
R
L
Q
Y
L
A
H
R
E
L
R
N
A
------
L
---
L
E
N
G
A
K
A
G
S
L
V
I
----
M
D
V
K
T
G
E
I
L
A
M
T
N
------------------------
46
HHSearch
45.31
17%
-63
- C6 -
3DXS
2
HMA7_ARATH
X:
[1-70]
-----------------------
M
R
K
I
Q
V
G
V
T
G
-
M
--
T
C
A
A
C
----
S
N
S
---
V
E
A
A
L
M
N
--
V
N
G
V
F
K
A
S
V
A
--
L
-----
L
-----
Q
---
N
R
---
A
D
V
V
F
D
P
----
N
--
L
V
K
E
E
D
I
K
E
E
I
E
------
D
------------------------------------------
A
------
G
F
E
A
E
I
L
A
E
E
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.28
36%
-113
- C6 -
4JK2
-
RPOB_ECOLI
C:
[306-344]
-------------------------------
T
G
-
E
L
-
I
C
A
A
N
----
M
E
L
---
S
L
D
L
L
A
K
--
L
S
Q
S
G
H
K
R
I
E
T
L
F
-----
T
------------------
N
D
L
----
D
--
H
G
P
Y
I
S
E
T
L
R
V
D
------
P
------------------------------------------
T
------
N
D
R
L
S
A
L
V
E
I
Y
R
---------
M
M
R
P
G
E
----------------
P
P
T
R
E
A
A
E
S
L
F
E
N
L
F
F
----
S
E
D
R
Y
D
L
----
S
A
V
G
R
---
M
K
F
---
N
R
S
-----
L
L
R
E
E
I
E
G
S
G
-----
I
L
--
S
K
D
D
----
I
I
D
V
M
K
K
L
I
D
----
I
-
R
N
G
K
G
E
V
D
D
I
D
H
L
G
N
------
R
---
R
I
R
S
V
G
E
M
A
E
N
Q
----
F
R
V
G
L
V
R
V
E
R
A
V
K
------------------------
45
HHSearch
45.14
18%
-76
- C6 -
3GHF
1
MINC_SALTY
A:
[25-77]
----------------------------------------
A
E
----
P
E
V
---
I
R
Q
A
L
E
D
--
K
I
A
Q
----
A
P
A
F
L
-----
K
-----
H
---
A
P
---
V
V
I
N
V
S
G
----
L
ES
P
V
N
W
P
E
L
H
K
I
V
T
------
S
------------------------------------------
T
------
G
L
R
I
I
G
V
S
G
C
K
D
---------
A
S
L
K
V
E
----------------
I
D
R
M
G
L
P
L
L
T
E
G
K
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------