@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3784: (2016-02-20 )
MNSNRYPLPAQTGLVVAPGLPPKNSTLRPDQLNKRLSSAWHHLYDLCPELLKIDPPDGLTILRGFLQWAAEQKAAWNWAMHLRLYCWLLQSPFGAKVTDEHLEVLMDASAARWTVDDTSANRGILLASQGGAHITQDWKAPQAGAGTRVPLERLDLPAPNWTFAYCAVPDPRLREFPGWKPLPARGSLVG
Atome Classification :
(20 SA)
---------------------------------------.........10-.........20.-.......-----30.-..----------..---...40.-....-----...----50.----------.------...--...60..-------------......70-------------.....---....80----..---..---------.----------..-.90-----....----------------.....100--...--.-------...110.-----......---.120...------....130-------......-.-..140-.........150.------------......-160.-..-....170----....-------...180.......190----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------MNSNRYPLPA--QT
G
L
V
VAPGLPP-KNSTL
R
P
-----
D
Q
L
-
N
K
----------
R
L
---
S
S
A
W
H
H
-
L
Y
D
L-----
C
P
E
----
L
LK----------I------DPP--D
G
L
T
I
L
R
-------------
G
F
L
Q
W
A
A
--------------
E
QKAA---
W
N
W
A
M
H
----
L
R
---
L
Y
---------
C
----------
W
L
-LQ------SPFG----------------AKV
T
D
E
H
L
--
E
V
L
--
M
-------DASA
A
-
R
-----
W
T
VDDT---SANR
G
I
L
------
L
ASQG---------GAHITQ-D-WKA---PQAGAGTRV
P
L
E
R------------LDLPAP-N
W
T
F
-
A
Y
-
C
AVPD
P
R
----
L
REF-------PGWKPLPARGSLVG------------------------------
26
Fugue
75.38
18%
-78
- C1 -
4QPI
5
?
A:
[3-275]
DDSGGFST
T
V
S
T
EQNVPDPQVGITTMRMDVSGVQAPVGA
I
T
T
I
E
D
P
V
L
A
--
K
K
V
P
E
T
F
P
E
L
K
P
-
G
E
S
R
H
T
S
-----
D
H
M
-
S
I
----------
Y
K
F
M
G
R
S
H
F
L
C
-
T
F
T
F
-----
N
S
N
N
K
E
Y
T
F
P
----------
I
TLSSTS
N
P
P
--
H
G
L
P
----------------
S
T
L
R
W
F
F
--------------
N
L
F
Q
L
---
Y
R
G
P
L
D
----
L
T
---
I
I
---------
I
T
G
ATD
V
D
G
M
A
W
F
-
T
P
VG
L
A
V
D
T
P
W
V
----------------
E
K
E
S
A
L
Q
I
--
D
Y
K
--
T
-------
A
L
G
A
V
-
R
-----
F
N
T
R
R
T
---
G
N
I
Q
I
R
L
P
WYSYL
Y
A
V
S
G
---------
A
L
D
G
L
G
-
D
-
K
T
D
---
S
T
F
G
-
L
V
S
I
Q
I
A
N
------------
Y
N
H
S
D
E
-
Y
L
S
F
S
C
Y
-
L
S
V
T
E
Q
S
----
E
F
Y
F
-------
P
-
R
A
P
L
N
S
N
A
M
L
S
T
ESM---------------------------
21
Fugue
74.05
20%
-50
- C3 -
1IDS
1
SODF_MYCTU
A:
[2-199]
------------------------------------------
A
E
Y
T
L
P
D
LD
W
D
Y
G
A
L
E
P
H
I
S
G
-
Q
I
N
E
L
H
H
-----
S
K
H
-
H
A
----------
T
Y
---
V
K
G
A
N
D
-
A
V
A
------
K
L
E
----
E
A
R
----------
A
---------------
K
E
D
-------------
H
S
A
I
L
L
N
--------------
E
K
N
L
A
---
F
N
L
A
G
H
V
---
N
H
---
T
I
---------
W
----------
W
K
-
N
L
------
S
P
--NGGDKPTG
E
L
A
A
A
I
A
D
A
F
G
S
F
D
K
F
--
R
A
Q
--
F
-------
H
A
A
A
T
-
T
VQ
G
S
G
W
A
A
L
G
W
---
D
T
L
G
N
K
L
------
L
I
F
Q
V
---------
Y
D
H
Q
T
N
-
F
-
P
L
---------
G
-
I
V
P
L
L
L
------------
L
D
M
-----
W
E
H
-
A
F
-
Y
L
Q
Y
K
N
V
----
K
V
D
F
A
K
A
FWNV
V
N
W
A
D
V
Q
S
R
Y
A
A
A
T
S-----------------------------
22
Fugue
72.57
22%
-61
* C3 *
4UMI
-
SPIKE_ADES1
A:
[95-208]
---------------------------------------------------------------------------------
P
----------
L
P
---
S
P
P
S
K
T
-
S
L
D
I
-----
A
E
E
----
L
Q
N
-------------------
D
--
K
G
V
-----------------
S
F
A
F
Q
A
R
--------------
E
E
E
L
G
---
A
F
T
K
R
T
----
L
F
---
A
Y
---------
S
----------
G
D
G
L
T
------
G
P
F
K
----------------
A
P
A
S
A
E
L
S
--
S
F
L
--
T
-------
A
H
P
K
G
-
R
-----
W
L
I
A
F
----
P
L
G
T
G
I
V
------
S
V
D
E
G
---------
I
L
T
L
E
I
-
S
-
R
S
L
---
P
E
V
G
S
G
S
S
F
Y
L
T
E
------------
K
--------------------------------------------------------------------------------
23
Fugue
68.04
17%
-64
* C6 *
4ZC4
1
?
A:
[12-158]
----------------------------------------
Q
H
P
S
H
E
L
L
K
--
E
N
G
F
T
Q
H
V
Y
H
K
Y
-
R
R
R
C
L
N
E
-----
R
K
R
L
G
I
----------
G
Q
---
S
Q
E
M
N
T
-
L
F
R
F
-----
W
S
F
----
F
L
R
------------------
D
H
--
F
N
K
K
M
Y
E
-------------
E
F
K
Q
L
A
L
--------------
E
D
A
K
E
GYR
Y
G
L
E
C
L
----
F
R
---
Y
Y
---------
S
----------
Y
G
-
L
E
------
K
K
F
R
----------------
L
D
I
F
K
D
F
Q
--
E
E
T
--
V
-------
K
D
Y
E
A
---------------------------------------------------------------
G
Q
L
Y
G
L
E
K
------------
F
-
W
A
F
L
-
K
Y
S
K
-
A
K
-
N
L
D
I
D
P
K
----
L
Q
E
Y
-------
L
G
K
F
R
---------------------------------------
20
Fugue
65.87
16%
-20
- C2 -
4MT5
-
?
A:
[1-184]
---------------------------------------
M
-----------
Q
T
A
Y
V
K
Y
V
D
-
D
T
-
T
G
E
T
L
R
Q
-----
D
D
L
-
H
G
----------
Y
T
---
D
---
E
T
-
I
P
Y
S
-----
T
A
E
----
G
I
K
----------
K
------
Y
E
G
--
D
G
Y
V
L
V
S
D------------
G
F
K
P
G
T
K
--------------
F
G
V
G
T
---
P
T
Y
E
V
H
----
F
K
H
G
M
T
H
---------
T
----------
D
A
-
T
D
------
K
N
A
E
----------------
Q
K
T
V
T
E
T
I
--
H
Y
V
D
E
N
-------
N
Q
T
V
Q
-
P
-----
D
S
T
T
A
V
---
T
F
K
R
G
Y
T
------
T
D
N
V
T
---------
G
K
V
V
S
Y
-
D
P
W
T
V
---
D
G
N
Q
A
D
S
K
T
F
A
A
V
------------
P
S
P
A
V
E
-
G
Y
T
P
-
N
H
-
Q
Q
I
N
E
F
T
----
V
T
---------
P
D
S
K
D
I
V
K
T
V
V
Y
V
G
DP----------------------------
19
Fugue
58.55
17%
3
- C3 -
2IWV
21
OMPG_ECOLI
A:
[5-281]
----------------------------------------
N
D
W
H
F
N
I
G
A
--
M
Y
E
I
E
N
V
E
G
Y
G
E
D
M
D
G
L
A
E
P
-----
S
V
Y
-
F
N
----------
A
A
---
N
G
P
W
R
I
-
A
L
A
Y
-----
Y
Q
E
----
G
P
V
DYSAGKR
G
T
W
F
------
D
R
P
--
E
L
E
V
H
Y
Q
FLENDD
F
S
F
G
L
T
G
G
F
R
N
Y
G
Y
H
Y
V
DEPGKD
T
A
N
M
Q
R
W
K
I
A
---
P
D
W
D
V
K
LTDD
L
R
---
F
N
---------
G
----------
W
L
-
S
M
------
Y
K
F
A
----------------
N
D
L
N
T
T
G
Y
AD
T
R
V
--
E
-------
T
E
T
G
L
-
Q
-----
Y
T
F
N
E
T
---
V
A
L
R
V
N
Y
------
Y
L
E
R
G
F
N
MDDSRNN
G
E
F
S
T
Q
-
E
-
I
R
A
Y
L
P
L
T
L
G
N
H
S
V
T
P
Y
T
R
------------
I
G
L
D
R
W
S
N
W
D
W
-
Q
D
D
I
E
R
E
G
H
D
----
F
N
R
V
-------
G
L
F
Y
G
Y
D
F
Q
N
G
L
S
V
S
L
E
Y
A
F
E
W
Q
D
H
DEGD
S
D
K
F
H
Y
A
G
V
G
V
N
Y
S
F
27
Fugue
56.29
16%
-33
* C4 *
4D0Y
7
?
A:
[1-184]
--------------------------------------A
E
V
V
N
K
G
D
Y
Y
S
--
I
Q
G
K
Y
D
E
I
I
V
A
N
-
K
H
Y
P
L
S
K
-----
D
Y
N
-
P
G
----------
E
N
---
P
T
A
K
A
E
-
L
V
K
L
-----
I
K
A
----
M
Q
E
----------
A
------
G
F
P
IS
D
H
Y
S
G
F
R
-------------
S
Y
E
T
Q
T
K
--------------
L
Y
Q
D
Y
---
V
N
Q
D
G
K
----
E
A
---
A
D
---------
R
----------
Y
S
-
A
R
------
P
G
Y
S
----------------
E
H
Q
T
G
L
A
F
--
D
V
I
--
G
TDGDLVT
E
E
K
A
A
-
Q
-----
W
-
L
L
D
H
---
A
A
D
Y
G
F
V
------
V
R
Y
L
K
---------
G
K
E
K
E
T
-
G
-
Y
M
A
---
E
E
W
H
L
R
Y
-
V
G
K
E
A
------------
K
E
I
A
E
S
-
G
L
S
----------------
L
E
E
Y
-------
Y
G
F
E
G
----
G
D
Y
V
D
------------------------------
25
Fugue
52.76
19%
-12
- C6 -
3WOZ
-
CLAP2_MOUSE
A:
[4-228]
-----------------------------TED
V
A
E
V
L
N
R
C
A
S
S
N
W
S
-
E
R
--
K
E
G
L
L
G
L
Q
N
L
L
K
-
N
Q
R
T
L
S
R
-----
I
E
L
--
K
----------
R
L
---
C
E
I
F
T
R
M
F
A
D
P
-----
H
G
K
----
V
F
S
M
---------
F
-------------
L
E
T
L
V
-------------
D
F
I
Q
V
H
K
--------------
D
D
L
Q
D
---
W
L
F
V
L
L
----
T
Q
---
L
L
K
K
M
G
ADLL
G
S
----------
V
Q
-
A
K
------
V
Q
K
A
----------------
L
D
I
T
R
E
S
F
--
P
N
D
--
L
-------
Q
F
N
I
L
M
R
-----
F
T
V
D
Q
T
Q
T
P
S
L
K
V
K
V
A
------
I
L
K
Y
I
---------
E
T
L
A
K
Q
M
D
-
P
R
D
---
F
T
N
S
S
E
T
R
L
A
V
S
R
V
I
T
W
T
T
EPKS
S
D
V
R
K
A
A
Q
-
S
V
L
I
-
S
L
-
F
E
L
N
T
P
E
F
T
M
L
L
G
A
L
-------
P
K
T
F
Q
D
G
A
T
K
L
L
H
N
------------------------------
9
PsiBlast_PDB
50.40
33%
-30
- C5 -
4CKE
-
MCEL_VACCW
A:
[197-266]
-------------------------------------------------------------
P
R
-
D
N
E
T
V
P
Y
-----
D
E
L
-
I
K
----------
E
L
---
T
T
L
S
R
H
-
I
F
M
A
-----
S
P
E
----
N
V
I
----------
L
------
S
P
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
49.90
33%
-38
- C5 -
4CKB
-
MCEL_VACCW
A:
[197-260]
-------------------------------------------------------------
P
R
-
D
N
E
T
V
P
Y
-----
D
E
L
-
I
K
----------
E
L
---
T
T
L
S
R
H
-
I
F
M
A
-----
S
P
E
----
N
V
I
----------
L
------
S
P
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.57
33%
-47
- C5 -
4CKC
-
MCEL_VACCW
A:
[197-251]
-------------------------------------------------------------
P
R
-
D
N
E
T
V
P
Y
-----
D
E
L
-
I
K
----------
E
L
---
T
T
L
S
R
H
-
I
F
M
A
-----
S
P
E
----
N
V
I
----------
L
------
S
P
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
47.98
13%
-40
- C4 -
1HZM
-
DUS6_HUMAN
A:
[1-154]
---------------------------------------
M
I
D
T
L
R
P
V
P
F
--
A
S
E
M
A
I
S
K
T
V
A
W
-
L
N
E
Q
L
E
L
-----
G
N
------------------------------------
E
R
----
L
L
L
----------
M
------
D
---------
C
R
-------------
P
Q
E
L
Y
E
S
--------------
S
H
I
E
S
------
A
I
N
----
V
A
---
I
P
---------
G
----------
I
M
-
L
R
------
R
L
Q
K
----------------
G
N
L
P
V
R
A
L
-------
F
-------
T
R
G
E
D
-
R
-----
D
R
F
T
R
R
---
C
G
T
D
T
V
V
------
L
Y
D
E
S
---------
S
S
D
W
N
E
-
N
-
T
G
G
---
E
S
L
L
G
L
L
L
K
K
L
K
D
------------
E
G
C
R
A
-----------
F
Y
L
E
G
G
----
F
S
K
F
-------
Q
A
E
F
S
L
H
C
E
T
N
L
D
G
S-----------------------------
1
PsiBlast_PDB
42.32
30%
6
- C7 -
2PMZ
-
?
B:
[163-243]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
D
L
---
A
P
N
R
V
L
V
------
D
T
G
K
T
---------
G
S
N
I
T
H
-
T
-
A
K
I
---
I
S
S
T
A
G
Y
R
V
P
V
T
I
------------
E
R
L
K
D
G
-
T
F
H
V
-
S
F
-
P
A
V
P
--------------------------------------------------------------
6
PsiBlast_PDB
40.54
30%
5
- C7 -
4AYB
-
?
B:
[166-237]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
D
L
---
A
P
N
R
V
L
V
------
D
T
G
K
T
---------
G
S
N
I
T
H
-
T
-
A
K
I
---
I
S
S
T
A
G
Y
R
V
P
V
T
I
------------
E
R
L
K
D
G
-
T
F
H
V
-
S
F
-
P
A
V
P
--------------------------------------------------------------
3
PsiBlast_PDB
38.89
30%
2
- C7 -
2WAQ
1
?
B:
[166-244]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
D
L
---
A
P
N
R
V
L
V
------
D
T
G
K
T
---------
G
S
N
I
T
H
-
T
-
A
K
I
---
I
S
S
T
A
--
R
V
P
V
T
I
------------
E
R
L
K
D
G
-
T
F
H
V
-
S
F
-
P
A
V
P
--------------------------------------------------------------
4
PsiBlast_PDB
37.26
30%
3
- C7 -
2WB1
-
?
B:
[166-244]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
D
L
---
A
P
N
R
V
L
V
------
D
T
G
K
T
---------
G
S
N
I
T
H
-
T
-
A
K
I
---
I
S
S
T
A
--
R
V
P
V
T
I
------------
E
R
L
K
D
G
-
T
F
H
V
-
S
F
-
P
A
V
P
--------------------------------------------------------------
2
PsiBlast_PDB
37.23
30%
13
* C7 *
3HKZ
-
?
B:
[163-243]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
D
L
---
A
P
N
R
V
L
V
------
D
T
G
K
T
---------
G
S
N
I
T
H
-
T
-
A
K
I
---
I
S
S
T
A
G
Y
R
V
P
V
T
I
------------
E
R
L
K
D
G
-
T
F
H
V
-
S
F
-
P
A
V
P
--------------------------------------------------------------
5
PsiBlast_PDB
36.42
30%
6
- C7 -
2Y0S
-
?
B:
[166-245]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
D
L
---
A
P
N
R
V
L
V
------
D
T
G
K
T
---------
G
S
N
I
T
H
-
T
-
A
K
I
---
I
S
S
T
------
V
T
I
------------
E
R
L
K
D
G
-
T
F
H
V
-
S
F
-
P
A
V
P
--------------------------------------------------------------
10
HHSearch
34.18
29%
-1
- C5 -
3II2
6
Y157_AFV1Y
A:
[62-112]
-------------------------------------------------------------
V
L
-
K
N
Q
D
Y
A
R
F
E
I
A
W
V
H
V
-
D
K
DG
K
I
E
E
R
T
V
Y
S
I
---
E
T
Y
W
H
I
-
F
I
D
I
ENDLN
C
P
Y
----
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
24.18
27%
78
- C5 -
2OJ4
-
A:
[16-30]
-------------------------------------------------------------------------------------------------------------------------------------
L
------
V
H
K
--
Y
G
L
A
V
F
Q
-------------
A
F
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------