@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0630: (2015-12-03 )
MMKITISKVLPDFETLVVGLFEDGELVSNGKVLQDKQIINSIKKFSHFNGGFGEFFSVTLSDGKNVIIVGLGKRDEWNENKELSVGGKIYCELGRLKIKQATVSIEGSAENIAYGAFLRSFKFDKYKTKKDEEITEVEEIMVLAKDEQLNDAEKSFEHLRQEGEGIFLARTFITEPPNVLYPESYADCIKSELTKFGLEIEVLDKKQMEKKKMGALLGVAQGSSKEPKLVVIRWNGASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSAAVVGVMRTLAGRKARINAVGVVALAENAIDGNAQRPSDVVTSMSGQTIEVLNTDAEGRLVLADALWYTQDRFAPEFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLVEAGNEANEKLWRFPMNETYDKIIDSPIADVQNIAPTGSGGDSIMAAQFLQRFVNDTCWAHLDIAGTAWHEKGTDISPKGAVGFGVRLLNKLVEKYYETSD

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLU_B_10(1LCP)
AMPL_BOVIN
[Raw transfer]



LEU_A_5(1LAN)
AMPL_BOVIN
[Raw transfer]



PLU_A_9(1LCP)
AMPL_BOVIN
[Raw transfer]



GOL_A_10(2HC9)
AMPL_CAEEL
[Raw transfer]



AHY_D_11(2J9A)
AMPL_BOVIN
[Raw transfer]



GOL_A_9(2HC9)
AMPL_CAEEL
[Raw transfer]



ZED_A_6(2EWB)
AMPL_BOVIN
[Raw transfer]



CHAIN_I_2(1BLL)
AMPL_BOVIN
[Raw transfer]
-
CHAIN_D_2(2J9A)
AMPL_BOVIN
[Raw transfer]
-
167 Fugue 95.5436% -82 - C3 -1GYT - AMPA_ECOLI -
178 HHSearch 95.5337% -85 - C3 -1GYT - AMPA_ECOLI -
177 HHSearch 95.2637% -88 - C3 -3H8G - AMPA_PSEPU -
176 HHSearch 93.8240% -87 - C3 -3JRU - AMPA_XANOR -
39 PsiBlast_CBE 93.4336% -87 - C3 -1GYT - AMPA_ECOLI -
40 PsiBlast_CBE 93.2536% -87 - C3 -1GYT - AMPA_ECOLI -
42 PsiBlast_CBE 93.0936% -87 - C3 -1GYT - AMPA_ECOLI -
32 PsiBlast_CBE 92.8036% -85 - C3 -1GYT - AMPA_ECOLI -
5 PsiBlast_PDB 92.7436% -85 - C3 -1GYT - AMPA_ECOLI -
41 PsiBlast_CBE 92.7236% -86 - C3 -1GYT - AMPA_ECOLI -
171 Fugue 91.5433% -82 - C3 -4KSI - AMPL1_SOLLC -
180 HHSearch 90.3933% -75 - C3 -1LAM - AMPL_BOVIN -
175 HHSearch 90.1232% -80 - C3 -3KZW - ? -
179 HHSearch 89.9935% -89 - C3 -3PEI - ? -
118 PsiBlast_CBE 89.8734% -79 - C3 -3T8W - ? -
99 PsiBlast_CBE 89.4534% -77 - C3 -4K3N - ? -
74 PsiBlast_CBE 89.3334% -81 - C3 -4R7M - ? -
122 PsiBlast_CBE 89.3034% -78 - C3 -3KR5 - ? -
117 PsiBlast_CBE 89.2234% -78 - C3 -3T8W - ? -
111 PsiBlast_CBE 89.1334% -77 - C3 -3T8W - ? -
13 PsiBlast_PDB 87.2135% -72 - C3 -1LAN 2.4 AMPL_BOVIN
54 PsiBlast_CBE 87.1235% -73 - C3 -1LCP 2.5 AMPL_BOVIN
11 PsiBlast_PDB 87.1235% -70 - C3 -2EWB 3.3 AMPL_BOVIN
10 PsiBlast_PDB 87.0435% -71 - C3 -2J9A 5.0 AMPL_BOVIN
7 PsiBlast_PDB 86.8835% -71 - C3 -1BLL 3.7 AMPL_BOVIN
12 PsiBlast_PDB 86.7735% -72 - C3 -1LCP 3.3 AMPL_BOVIN