@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1650: (2016-03-27 )
MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQSYRKDGYMIELGPESYLGRKTIMTELAKDIGLEQDIVTNTTGQSYIFAKNKLYPIPGGSIMGIPTDIKPFVTTKLISPLGKLRAGLDLIKKPIQMQDGDISVGAFFRARLGNEVLENLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKGMKDEKNKRLKQRQLYPGAPKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQKQYKIVYSNQQEDVFDGVLVTTPHQVFLNWFGQDPAFDYFKTMDSTTVATVVLAFDEKDIENTYDGTGFVIARTSDTDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDNELVSIVRRDLSQMMTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEAVGLPDCITQGKVAAEEVIAEL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(3I6D)
PPOX_BACSU
[Raw transfer]




FAD_B_6(3I6D)
PPOX_BACSU
[Raw transfer]




FAD_A_3(3I6D)
PPOX_BACSU
[Raw transfer]




FAD_A_2(3LOV)
?
[Raw transfer]




FAD_A_2(3LOV)
?
[Raw transfer]




ACJ_A_4(3I6D)
PPOX_BACSU
[Raw transfer]




ACJ_B_7(3I6D)
PPOX_BACSU
[Raw transfer]




21 PsiBlast_CBE 92.5947% -98 - C2 -3I6D 9.0 PPOX_BACSU
1 PsiBlast_PDB 90.8447%-100 - C2 -3I6D 10.1 PPOX_BACSU
114 HHSearch 89.5547% -94 - C2 -3I6D 10.1 PPOX_BACSU
116 HHSearch 87.0335% -92 - C2 -3LOV 12.3 ?
2 PsiBlast_PDB 86.5634% -88 - C2 -3LOV 12.3 ?
112 HHSearch 76.7525% -87 - C2 -2IVD - PPOX_MYXXA -
3 PsiBlast_PDB 73.5526% -85 - C2 -2IVD - PPOX_MYXXA -
4 PsiBlast_PDB 73.0826% -82 - C2 -2IVE - PPOX_MYXXA -
5 PsiBlast_PDB 71.4525% -82 - C2 -1SEZ - PPOM_TOBAC -
113 HHSearch 69.8021% -75 * C2 *3NKS - PPOX_HUMAN -
115 HHSearch 69.2925% -77 - C2 -1SEZ - PPOM_TOBAC -
6 PsiBlast_PDB 69.0123% -70 - C2 -4IVO - PPOX_HUMAN -
7 PsiBlast_PDB 68.9223% -71 - C2 -3NKS - PPOX_HUMAN -
8 PsiBlast_PDB 67.6623% -75 - C2 -4IVM - PPOX_HUMAN -
121 HHSearch 55.5616% -66 - C2 -2VVM - AOFN_ASPNG -
120 HHSearch 55.3217% -68 - C2 -3KA7 - ? -
118 HHSearch 54.3317% -61 - C2 -1S3E - AOFB_HUMAN -
117 HHSearch 51.9916% -81 - C2 -3NRN - ? -
128 HHSearch 50.2017% -61 - C2 -1B37 - PAO_MAIZE -
119 HHSearch 48.3715% -53 - C2 -2YG5 - ? -