@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0044: (2015-12-12 )
MLVSRFLNAIDPFNLGVLLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKGTFVFILENDLHLDENSFYKKLLNLIIDNDFFNRSHLVTPSNGTNSHPELHRSITPREAARIQSFSDDYIFYGNKTSVCKQIGNAVPPLLALALGKAILKSARNDTNPSR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_24(3SWR)
DNMT1_HUMAN
[Raw transfer]




SFG_A_2(3SWR)
DNMT1_HUMAN
[Raw transfer]




1 PsiBlast_PDB 82.4553% -56 - C9 -3AV4 - DNMT1_MOUSE -
3 PsiBlast_PDB 81.2753% -50 - C9 -3AV6 - DNMT1_MOUSE -
2 PsiBlast_PDB 80.4053% -58 - C9 -3AV5 - DNMT1_MOUSE -
9 PsiBlast_PDB 79.4251% -51 - C9 -4YOC - DNMT1_HUMAN -
7 PsiBlast_PDB 74.3851% -51 - C9 -4WXX - ? -
23 PsiBlast_CBE 72.5951% -49 - C9 -4WXX - ? -
66 Fugue 69.5123% -49 - C10 -3AV4 - DNMT1_MOUSE -
13 PsiBlast_PDB 66.6742% -43 - C9 -4FT2 - CMT1_MAIZE -
64 Fugue 65.6421% -34 * C10 *3PT9 - DNMT1_MOUSE -
15 PsiBlast_PDB 65.6442% -51 - C9 -4FSX - CMT1_MAIZE -
28 PsiBlast_CBE 65.6042% -58 - C9 -4FT2 - CMT1_MAIZE -
4 PsiBlast_PDB 65.4253% -54 - C9 -3PT9 - DNMT1_MOUSE -
29 PsiBlast_CBE 65.4142% -52 - C9 -4FSX - CMT1_MAIZE -
21 PsiBlast_CBE 64.6853% -56 - C9 -4DA4 - DNMT1_MOUSE -
10 PsiBlast_PDB 64.3551% -56 - C9 -3PTA - DNMT1_HUMAN -
27 PsiBlast_CBE 64.3042% -49 - C9 -4FT4 - CMT1_MAIZE -
5 PsiBlast_PDB 63.8553% -56 - C9 -4DA4 - DNMT1_MOUSE -
54 HHSearch 63.7039% -33 - C9 -3SWR 3.3 DNMT1_HUMAN
14 PsiBlast_PDB 63.2042% -48 - C9 -4FT4 - CMT1_MAIZE -
22 PsiBlast_CBE 62.7253% -49 - C9 -3PT6 - DNMT1_MOUSE -