@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0292: (2016-03-14 )
MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGVTPEGEKFAGATEDAAEASSTNAFFEEASNKESEPARPAPGPRRAGTTGGGAVPPNRVNNGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKATKVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDSLKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKLEAAKTTT

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
BOG_B_9(3TJO)
HTRA1_HUMAN
[Raw transfer]



DFP_A_2(3MH6)
DEGP_ECOLI
[Raw transfer]



CHAIN_H_8(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3OU0)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_F_6(3PV3)
?
[Raw transfer]
-
CHAIN_F_6(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_B_2(3MH7)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_G_7(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3NZI)
HTRA1_HUMAN
[Raw transfer]
-
CHAIN_E_5(3PV3)
?
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
77 Fugue 96.8038% -70 - C4 -3PV2 - ? -
17 PsiBlast_PDB 87.7634% -56 - C4 -4IC6 - DEGP8_ARATH -
85 HHSearch 83.5837% -54 - C4 -3STJ - DEGQ_ECOLI -
23 PsiBlast_CBE 82.3240% -65 - C4 -3PV3 5.4 ?
89 HHSearch 82.1935% -68 - C4 -3PV2 - ? -
21 PsiBlast_CBE 82.0540% -73 - C4 -3PV3 5.8 ?
1 PsiBlast_PDB 81.9340% -56 - C4 -4YNN - ? -
4 PsiBlast_PDB 81.7740% -67 - C4 -3PV2 - ? -
7 PsiBlast_PDB 81.1840% -60 - C4 -3PV3 5.0 ?
90 HHSearch 80.5436% -53 - C4 -3QO6 4.1 DEGP1_ARATH
28 PsiBlast_CBE 80.4336% -54 - C4 -3STJ - DEGQ_ECOLI -
26 PsiBlast_CBE 80.4336% -52 - C4 -3STJ - DEGQ_ECOLI -
33 PsiBlast_CBE 80.1136% -54 - C4 -3STJ - DEGQ_ECOLI -
27 PsiBlast_CBE 79.8236% -53 - C4 -3STJ - DEGQ_ECOLI -
22 PsiBlast_CBE 79.5940% -62 - C4 -3PV3 3.6 ?
12 PsiBlast_PDB 79.5336% -51 - C4 -3STJ 4.9 DEGQ_ECOLI
31 PsiBlast_CBE 79.5236% -53 - C4 -3STJ - DEGQ_ECOLI -
30 PsiBlast_CBE 79.4636% -53 - C4 -3STJ - DEGQ_ECOLI -
34 PsiBlast_CBE 79.4436% -52 - C4 -3STJ - DEGQ_ECOLI -
24 PsiBlast_CBE 79.3336% -53 - C4 -3STJ - DEGQ_ECOLI -
36 PsiBlast_CBE 77.4236% -52 - C4 -3QO6 Error DEGP1_ARATH
16 PsiBlast_PDB 77.2536% -51 - C4 -3QO6 4.4 DEGP1_ARATH
35 PsiBlast_CBE 76.8536% -53 - C4 -3QO6 3.3 DEGP1_ARATH
10 PsiBlast_PDB 76.6339% -53 - C4 -3OU0 4.5 DEGP_ECOLI
11 PsiBlast_PDB 76.4639% -52 - C4 -3MH7 4.5 DEGP_ECOLI
2 PsiBlast_PDB 74.1838% -52 - C4 -3MH6 3.5 DEGP_ECOLI
18 PsiBlast_PDB 65.1233% -56 - C4 -3NZI 6.5 HTRA1_HUMAN
41 PsiBlast_CBE 63.6136% -63 - C4 -3TJO 4.7 HTRA1_HUMAN