@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1239: (2016-03-22 )
MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ITT_A_11(2Q16)
RDGB_ECOLI
[Raw transfer]



ITT_A_5(2E5X)
NTPA_PYRHO
[Raw transfer]



ITT_A_3(2DVO)
NTPA_PYRHO
[Raw transfer]



IMP_B_7(3S86)
NTPA_THEMA
[Raw transfer]



IMP_A_5(3S86)
NTPA_THEMA
[Raw transfer]



IMP_D_11(3S86)
NTPA_THEMA
[Raw transfer]



IMP_C_9(3S86)
NTPA_THEMA
[Raw transfer]



IMP_A_16(2DVN)
NTPA_PYRHO
[Raw transfer]



IMP_B_17(2DVN)
NTPA_PYRHO
[Raw transfer]



IMP_A_2(2PYU)
RDGB_ECOLI
[Raw transfer]



GOL_A_18(2DVN)
NTPA_PYRHO
[Raw transfer]



ANP_C_3(2MJP)
NTPA_METJA
[Raw transfer]
102 HHSearch 94.3540% -86 - C7 -3TQU - NTPA_COXBU -
5 PsiBlast_PDB 93.0140% -84 - C7 -3TQU - NTPA_COXBU -
21 PsiBlast_CBE 90.7547% -84 - C7 -4BNQ - NTPA_STAAN -
3 PsiBlast_PDB 90.6546% -84 - C7 -1K7K - RDGB_ECOLI -
2 PsiBlast_PDB 90.0345% -83 - C7 -2PYU 5.2 RDGB_ECOLI
9 PsiBlast_PDB 89.6132% -94 - C7 -1B78 - NTPA_METJA -
4 PsiBlast_PDB 89.0245% -76 - C7 -2Q16 8.4 RDGB_ECOLI
8 PsiBlast_PDB 88.9632% -91 - C7 -2MJP 5.7 NTPA_METJA
6 PsiBlast_PDB 88.2738% -69 - C7 -1VP2 - NTPA_THEMA -
1 PsiBlast_PDB 88.1547% -67 - C7 -4BNQ - NTPA_STAAN -
105 HHSearch 87.5637% -74 - C7 -1VP2 - NTPA_THEMA -
118 Fugue 87.2233% -90 * C7 *1B78 - NTPA_METJA -
24 PsiBlast_CBE 86.3538% -64 - C7 -3S86 6.2 NTPA_THEMA
22 PsiBlast_CBE 86.1938% -64 - C7 -3S86 6.3 NTPA_THEMA
25 PsiBlast_CBE 85.9838% -66 - C7 -1VP2 - NTPA_THEMA -
7 PsiBlast_PDB 85.3438% -62 - C7 -3S86 6.3 NTPA_THEMA
23 PsiBlast_CBE 84.4238% -61 - C7 -3S86 6.4 NTPA_THEMA
17 PsiBlast_PDB 82.6130% -72 - C7 -2I5D - ITPA_HUMAN -
18 PsiBlast_PDB 81.9230% -73 - C7 -2CAR - ITPA_HUMAN -
16 PsiBlast_PDB 81.3530% -72 - C7 -4F95 - ITPA_HUMAN -
26 PsiBlast_CBE 80.1032% -80 - C7 -2DVN 6.0 NTPA_PYRHO
10 PsiBlast_PDB 78.1333% -63 - C7 -2E5X 7.0 NTPA_PYRHO
12 PsiBlast_PDB 77.8632% -71 - C7 -2DVN 6.6 NTPA_PYRHO
13 PsiBlast_PDB 77.1632% -68 - C7 -2DVO 7.6 NTPA_PYRHO