@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1544: (2016-03-26 )
MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLRNLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQMVDLINQLRPDYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLLEKEDIEPPKLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDPVAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3Q9L)
MIND_ECOLI
[Raw transfer]




ATP_B_6(3Q9L)
MIND_ECOLI
[Raw transfer]




ATP_A_4(3Q9L)
MIND_ECOLI
[Raw transfer]




ATP_B_6(3Q9L)
MIND_ECOLI
[Raw transfer]




ADP_B_4(4RZ3)
?
[Raw transfer]




ADP_B_6(3R9J)
MIND_ECOLI
[Raw transfer]




ADP_B_10(3R9I)
MIND_ECOLI
[Raw transfer]




ATP_A_6(4V02)
?
[Raw transfer]




ACP_A_3(1G3R)
?
[Raw transfer]




ATP_B_8(4V02)
?
[Raw transfer]




ADP_A_3(4V03)
?
[Raw transfer]




ADP_B_5(4V03)
?
[Raw transfer]




ADP_A_3(1G3Q)
?
[Raw transfer]




ADP_A_3(1G3Q)
?
[Raw transfer]




ADP_A_9(3R9I)
MIND_ECOLI
[Raw transfer]




ADP_A_3(1ION)
?
[Raw transfer]




ADP_B_6(3R9J)
MIND_ECOLI
[Raw transfer]




ATP_B_6(3Q9L)
MIND_ECOLI
[Raw transfer]




ADP_B_10(3R9I)
MIND_ECOLI
[Raw transfer]




ADP_D_12(3R9I)
MIND_ECOLI
[Raw transfer]




ADP_D_12(3R9I)
MIND_ECOLI
[Raw transfer]




AF3_A_17(1IHU)
ARSA1_ECOLX
[Raw transfer]




115 Fugue 94.6644%-101 - C2 -3Q9L 2.2 MIND_ECOLI
23 PsiBlast_CBE 94.6444%-110 - C2 -3R9J 7.5 MIND_ECOLI
4 PsiBlast_PDB 94.6444%-105 - C2 -3R9I 2.7 MIND_ECOLI
5 PsiBlast_PDB 94.4844%-110 - C2 -3R9J 2.9 MIND_ECOLI
26 PsiBlast_CBE 94.3344%-108 - C2 -3R9I 7.7 MIND_ECOLI
125 HHSearch 94.3245% -98 * C2 *3Q9L 2.2 MIND_ECOLI
24 PsiBlast_CBE 93.9444%-106 - C2 -3R9I 7.5 MIND_ECOLI
3 PsiBlast_PDB 93.8344%-104 - C2 -3Q9L 2.2 MIND_ECOLI
25 PsiBlast_CBE 93.6744%-110 - C2 -3R9I 2.7 MIND_ECOLI
27 PsiBlast_CBE 93.6044%-104 - C2 -3Q9L 7.9 MIND_ECOLI
1 PsiBlast_PDB 93.2851%-117 - C2 -4V03 10.0 ?
2 PsiBlast_PDB 93.0950%-113 - C2 -4V02 8.3 ?
21 PsiBlast_CBE 91.9151%-116 - C2 -4V03 9.7 ?
22 PsiBlast_CBE 90.4450%-112 - C2 -4V02 8.3 ?
127 HHSearch 77.5431%-102 - C2 -1G3Q 8.7 ?
8 PsiBlast_PDB 76.9431%-101 - C2 -1G3R 7.9 ?
7 PsiBlast_PDB 76.6831%-102 - C2 -1G3Q 8.7 ?
10 PsiBlast_PDB 76.4530%-105 - C2 -4RZ2 - ? -
124 HHSearch 75.8833% -97 - C2 -1HYQ - ? -
9 PsiBlast_PDB 74.8532% -98 - C2 -1ION 8.2 ?
11 PsiBlast_PDB 74.1430% -98 - C2 -4RZ3 3.3 ?