@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1589: (2016-03-26 )
VENTIVIKLGGVASDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(1GSJ)
ARGB_ECOLI
[Raw transfer]




ANP_A_3(1GS5)
ARGB_ECOLI
[Raw transfer]




ANP_A_3(1GS5)
ARGB_ECOLI
[Raw transfer]




ANP_A_3(1GS5)
ARGB_ECOLI
[Raw transfer]




X2W_B_10(4USJ)
NAGK_ARATH
[Raw transfer]




ADP_A_2(3L86)
ARGB_STRMU
[Raw transfer]




ADP_A_2(3L86)
ARGB_STRMU
[Raw transfer]




DPO_A_2(3D40)
?
[Raw transfer]




ADP_A_2(1OHA)
ARGB_ECOLI
[Raw transfer]




ADP_A_6(4USJ)
NAGK_ARATH
[Raw transfer]




ADP_A_2(1OH9)
ARGB_ECOLI
[Raw transfer]




ADP_B_12(2RD5)
NAGK_ARATH
[Raw transfer]




X2W_B_5(2X2W)
ARGB_ECOLI
[Raw transfer]




X2W_A_3(2X2W)
ARGB_ECOLI
[Raw transfer]




ADP_A_3(1OHB)
ARGB_ECOLI
[Raw transfer]




NLG_B_8(2JJ4)
ARGB_SYNE7
[Raw transfer]




ADP_A_9(2RD5)
NAGK_ARATH
[Raw transfer]




ADP_A_9(2RD5)
NAGK_ARATH
[Raw transfer]




GLU_A_3(3T7B)
ARGB_YERPE
[Raw transfer]




NLG_A_7(2JJ4)
ARGB_SYNE7
[Raw transfer]




NLG_A_15(2BTY)
ARGB_THEMA
[Raw transfer]




NLG_B_17(2BTY)
ARGB_THEMA
[Raw transfer]




DTU_A_3(2WXB)
ARGB_ECOLI
[Raw transfer]




NLG_A_15(2BTY)
ARGB_THEMA
[Raw transfer]




NLG_C_19(2BTY)
ARGB_THEMA
[Raw transfer]




DTU_B_5(2WXB)
ARGB_ECOLI
[Raw transfer]




57 HHSearch 92.5239%-115 - C1 -3L86 5.6 ARGB_STRMU
32 PsiBlast_CBE 91.2738%-122 - C1 -2BUF - ARGB_PSEAE -
23 PsiBlast_CBE 90.9938%-119 - C1 -2BUF - ARGB_PSEAE -
58 HHSearch 90.9238%-111 - C1 -2BTY 1.9 ARGB_THEMA
31 PsiBlast_CBE 90.8438%-121 - C1 -2BUF - ARGB_PSEAE -
28 PsiBlast_CBE 90.4638%-124 - C1 -2BUF - ARGB_PSEAE -
2 PsiBlast_PDB 90.3339%-123 - C1 -3L86 5.6 ARGB_STRMU
3 PsiBlast_PDB 90.1138%-124 - C1 -2BUF - ARGB_PSEAE -
56 HHSearch 89.9738%-109 - C1 -2BUF - ARGB_PSEAE -
1 PsiBlast_PDB 89.0539%-128 - C1 -2BTY 1.9 ARGB_THEMA
33 PsiBlast_CBE 88.3838%-115 - C1 -2BUF - ARGB_PSEAE -
30 PsiBlast_CBE 87.8038%-123 - C1 -2BUF - ARGB_PSEAE -
27 PsiBlast_CBE 87.5238%-124 - C1 -2BUF - ARGB_PSEAE -
26 PsiBlast_CBE 87.1238%-116 - C1 -2BUF - ARGB_PSEAE -
40 PsiBlast_CBE 85.9734%-125 - C1 -4USJ 5.6 NAGK_ARATH
22 PsiBlast_CBE 85.4839%-126 - C1 -2BTY 2.2 ARGB_THEMA
7 PsiBlast_PDB 85.1434%-126 - C1 -2RD5 4.4 NAGK_ARATH
21 PsiBlast_CBE 84.8939%-131 - C1 -2BTY 2.6 ARGB_THEMA
59 HHSearch 83.5334%-114 - C1 -2RD5 5.4 NAGK_ARATH
5 PsiBlast_PDB 83.4733%-117 - C1 -2V5H - ARGB_SYNE7 -
41 PsiBlast_CBE 82.6334%-119 - C1 -2RD5 5.3 NAGK_ARATH
6 PsiBlast_PDB 81.8634%-119 - C1 -4USJ 5.6 NAGK_ARATH
39 PsiBlast_CBE 80.2433%-119 - C1 -2JJ4 3.3 ARGB_SYNE7
4 PsiBlast_PDB 79.8433%-118 - C1 -2JJ4 3.1 ARGB_SYNE7
12 PsiBlast_PDB 78.2134%-127 - C1 -2WXB 2.9 ARGB_ECOLI
13 PsiBlast_PDB 78.1034%-127 - C1 -2X2W 3.6 ARGB_ECOLI
43 PsiBlast_CBE 76.8534%-123 - C1 -2WXB 2.8 ARGB_ECOLI
15 PsiBlast_PDB 75.5133%-109 - C1 -3T7B 2.2 ARGB_YERPE
9 PsiBlast_PDB 74.4334%-114 - C1 -1OH9 5.4 ARGB_ECOLI
10 PsiBlast_PDB 73.2934%-113 - C1 -1OHA 6.0 ARGB_ECOLI
11 PsiBlast_PDB 73.1334%-112 - C1 -1OHB 4.1 ARGB_ECOLI
14 PsiBlast_PDB 73.0433%-111 - C1 -1GSJ 5.8 ARGB_ECOLI
42 PsiBlast_CBE 72.6234%-119 - C1 -2X2W 5.2 ARGB_ECOLI
8 PsiBlast_PDB 69.5034%-111 - C1 -1GS5 5.9 ARGB_ECOLI
62 HHSearch 68.7134%-100 - C1 -1GS5 5.9 ARGB_ECOLI
78 Fugue 66.2132% -98 - C1 -1GS5 5.9 ARGB_ECOLI