@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1709: (2016-03-27 )
MITLKSRREIDEMKAAGKILADTHKELKKIIKPGITSWDLEVFTEEFLRKNGATPEQKGFEGYEYAICASINDEICHGFPRKQKLNQGDIITVDMVVNYHGALADSAWTYAVGEVPDDVKHLMDVTHKALYLGIEQAQVGARVGDIGHAIQTYVESENLAVVREFIGHGVGPTLHEKPDIPHYGTAGKGPRLKEGMVITVEPMVNMGAWKAKMDDNGWTARTVDGSLSAQYEHTFAITKDGPEILTYQGEND

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U17_A_5(2GGB)
MAP1_ECOLI
[Raw transfer]




5C1_A_3(4A6W)
?
[Raw transfer]




YE7_A_4(2P98)
MAP1_ECOLI
[Raw transfer]




U16_A_5(2GG9)
MAP1_ECOLI
[Raw transfer]




U15_A_5(2GG8)
MAP1_ECOLI
[Raw transfer]




NLP_A_5(1C27)
MAP1_ECOLI
[Raw transfer]




W29_A_4(3D27)
MAP1_ECOLI
[Raw transfer]




NLP_A_9(2GU6)
MAP1_ECOLI
[Raw transfer]




NLP_B_10(2GU6)
MAP1_ECOLI
[Raw transfer]




B21_A_5(2Q93)
MAP1_ECOLI
[Raw transfer]




MPH_A_5(1C23)
MAP1_ECOLI
[Raw transfer]




FC2_A_5(2EVM)
MAP1_ECOLI
[Raw transfer]




FCD_A_5(1XNZ)
MAP1_ECOLI
[Raw transfer]




IKY_B_7(4A6V)
?
[Raw transfer]




YE6_A_4(2P99)
MAP1_ECOLI
[Raw transfer]




U11_A_5(2GG0)
MAP1_ECOLI
[Raw transfer]




FCD_A_4(3IU7)
MAP12_MYCTU
[Raw transfer]




A05_A_5(2Q95)
MAP1_ECOLI
[Raw transfer]




U13_A_5(2GG3)
MAP1_ECOLI
[Raw transfer]




CIT_B_5(3TB5)
?
[Raw transfer]




MET_C_17(4FO8)
?
[Raw transfer]




U12_A_5(2GG2)
MAP1_ECOLI
[Raw transfer]




U12_A_5(2GG2)
MAP1_ECOLI
[Raw transfer]




FC3_A_5(2EVC)
MAP1_ECOLI
[Raw transfer]




TMG_A_7(1YVM)
MAP1_ECOLI
[Raw transfer]




CIT_A_4(3TB5)
?
[Raw transfer]




CIT_A_4(3TB5)
?
[Raw transfer]




CT0_A_10(2EVO)
MAP1_ECOLI
[Raw transfer]




QMS_A_6(2BB7)
MAP1_ECOLI
[Raw transfer]




CT0_B_9(2EVO)
MAP1_ECOLI
[Raw transfer]




YE6_A_5(2P9A)
MAP1_ECOLI
[Raw transfer]




101 HHSearch 96.5666% -92 - C1 -3TB5 3.5 ?
1 PsiBlast_PDB 96.2366% -93 - C1 -3TB5 3.5 ?
21 PsiBlast_CBE 95.7066% -92 - C1 -3TB5 3.2 ?
5 PsiBlast_PDB 88.3842% -85 - C1 -3MX6 - MAP1_RICPR -
23 PsiBlast_CBE 87.6342% -84 - C1 -3MR1 - MAP1_RICPR -
25 PsiBlast_CBE 87.5842% -82 - C1 -3MX6 - MAP1_RICPR -
4 PsiBlast_PDB 87.3442% -84 - C1 -3MR1 - MAP1_RICPR -
104 HHSearch 87.0142% -83 - C1 -3MX6 - MAP1_RICPR -
28 PsiBlast_CBE 86.6139% -80 - C1 -4JUQ - ? -
2 PsiBlast_PDB 85.8749% -83 - C1 -4KM3 - ? -
24 PsiBlast_CBE 85.7042% -86 - C1 -3MR1 - MAP1_RICPR -
26 PsiBlast_CBE 85.5139% -79 - C1 -4JUQ - ? -
31 PsiBlast_CBE 85.3839% -82 - C1 -4FO8 - ? -
22 PsiBlast_CBE 85.3142% -85 - C1 -3MR1 - MAP1_RICPR -
27 PsiBlast_CBE 84.4839% -78 - C1 -4JUQ - ? -
8 PsiBlast_PDB 84.0539% -79 - C1 -4JUQ - ? -
29 PsiBlast_CBE 83.5539% -81 - C1 -4FO8 - ? -
33 PsiBlast_CBE 83.3539% -83 - C1 -4FO7 - ? -
7 PsiBlast_PDB 83.1639% -78 - C1 -4FO8 - ? -
6 PsiBlast_PDB 83.0539% -79 - C1 -4FO7 - ? -
30 PsiBlast_CBE 80.9339% -78 - C1 -4FO8 2.9 ?
12 PsiBlast_PDB 80.7736% -76 - C1 -4A6W 4.3 ?
51 PsiBlast_CBE 80.5636% -73 - C1 -2GG9 5.9 MAP1_ECOLI
57 PsiBlast_CBE 80.1936% -74 - C1 -2GG0 4.9 MAP1_ECOLI
56 PsiBlast_CBE 80.1036% -73 - C1 -2GG2 4.7 MAP1_ECOLI
52 PsiBlast_CBE 80.0536% -75 - C1 -2GG8 4.9 MAP1_ECOLI
58 PsiBlast_CBE 79.4836% -74 - C1 -4A6V 4.4 ?
68 PsiBlast_CBE 79.1136% -73 - C1 -3D27 3.7 MAP1_ECOLI
48 PsiBlast_CBE 79.1136% -74 - C1 -2Q93 3.8 MAP1_ECOLI
50 PsiBlast_CBE 79.0836% -75 - C1 -2GGB 4.2 MAP1_ECOLI
38 PsiBlast_CBE 79.0036% -74 - C1 -2P98 4.6 MAP1_ECOLI
103 HHSearch 78.9536% -74 - C1 -2GG2 4.7 MAP1_ECOLI
37 PsiBlast_CBE 78.9436% -74 - C1 -2P9A 3.4 MAP1_ECOLI
44 PsiBlast_CBE 78.7636% -75 - C1 -1XNZ 4.0 MAP1_ECOLI
63 PsiBlast_CBE 78.7336% -72 - C1 -2GU6 3.8 MAP1_ECOLI
55 PsiBlast_CBE 78.6236% -75 - C1 -2GG3 4.1 MAP1_ECOLI
39 PsiBlast_CBE 78.5036% -72 - C1 -2EVO 3.0 MAP1_ECOLI
17 PsiBlast_PDB 78.4336% -74 - C1 -1C23 5.0 MAP1_ECOLI
47 PsiBlast_CBE 78.2636% -73 - C1 -2Q95 4.4 MAP1_ECOLI
42 PsiBlast_CBE 78.1236% -71 - C1 -2EVC 4.9 MAP1_ECOLI
43 PsiBlast_CBE 78.1036% -75 - C1 -2BB7 3.1 MAP1_ECOLI
19 PsiBlast_PDB 78.1036% -75 - C1 -2P99 4.0 MAP1_ECOLI
14 PsiBlast_PDB 77.4736% -74 - C1 -1C27 2.6 MAP1_ECOLI
11 PsiBlast_PDB 77.4636% -75 - C1 -1YVM 3.9 MAP1_ECOLI
41 PsiBlast_CBE 77.4436% -74 - C1 -2EVM 4.2 MAP1_ECOLI
62 PsiBlast_CBE 76.9036% -75 - C1 -2GU6 3.9 MAP1_ECOLI
40 PsiBlast_CBE 75.7536% -74 - C1 -2EVO 2.9 MAP1_ECOLI
83 PsiBlast_CBE 73.5036% -82 - C1 -3IU7 4.0 MAP12_MYCTU