@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1082: (2015-12-05 )
MLEKCPIIALDFSDLASVTTFLEHFPKEELLFVKIGMELYYSEGPSIIRYIKSLGHRIFLDLKLHDIPNTVRSSMSVLAKLGIDMTNVHAAGGVEMMKAAREGLGEGPILLAVTQLTSTSQEQMQVDQHINLSVVDSVCHYAQKAQEAGLDGVVASAQEVKQIKKQTNEHFICLTPGIRPPQTNQLDDQKRTMTPEQARIVGADYIVVGRPITKAENPYQAYLEIKEEWNRIK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]




GOL_A_3(3VE9)
?
[Raw transfer]




GOL_E_5(2CZD)
PYRF_PYRHO
[Raw transfer]




EDO_A_4(1VQT)
PYRF_THEMA
[Raw transfer]




EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]




XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]




PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]




3 PsiBlast_PDB 92.9149%-106 - C1 -2YYU - PYRF_GEOKA -
23 PsiBlast_CBE 91.8549%-104 - C1 -2YYU 3.6 PYRF_GEOKA
2 PsiBlast_PDB 90.7249%-113 - C1 -2YYT - PYRF_GEOKA -
34 HHSearch 90.6948%-110 - C1 -2YYU 4.2 PYRF_GEOKA
8 PsiBlast_PDB 88.5042%-111 - C1 -3UWQ 6.0 PYRF_VIBCH
32 HHSearch 87.5352% -93 - C1 -1DBT 6.8 PYRF_BACSU
21 PsiBlast_CBE 87.5050% -95 - C1 -1DBT 7.5 PYRF_BACSU
53 Fugue 87.4552% -93 - C1 -1DBT 6.8 PYRF_BACSU
7 PsiBlast_PDB 86.6742%-108 - C1 -3LDV - PYRF_VIBCH -
1 PsiBlast_PDB 86.3250% -92 - C1 -1DBT 6.8 PYRF_BACSU
22 PsiBlast_CBE 86.2850% -96 - C1 -1DBT 7.3 PYRF_BACSU
28 PsiBlast_CBE 86.0342%-109 - C1 -3LDV - PYRF_VIBCH -
27 PsiBlast_CBE 85.8242%-110 - C1 -3UWQ 2.7 PYRF_VIBCH
44 HHSearch 81.9540%-105 - C1 -3LDV - PYRF_VIBCH -
54 Fugue 81.7951% -89 - C1 -1DBT 6.9 PYRF_BACSU
6 PsiBlast_PDB 81.7442%-100 - C1 -1L2U - PYRF_ECOLI -
24 PsiBlast_CBE 80.4942% -92 - C1 -1EIX 6.0 PYRF_ECOLI
26 PsiBlast_CBE 79.8342% -87 - C1 -1EIX 6.4 PYRF_ECOLI
25 PsiBlast_CBE 79.6042% -89 - C1 -1EIX 6.4 PYRF_ECOLI
35 HHSearch 79.5740% -91 - C1 -1EIX 6.4 PYRF_ECOLI
5 PsiBlast_PDB 79.5642% -88 - C1 -1EIX 6.4 PYRF_ECOLI