@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1382: (2015-12-07 )
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFYNIDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKYYEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_B_6(1SVW)
ENGB_BACSU
[Raw transfer]




GDP_A_3(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]




GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]




GDP_A_3(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_B_5(3PQC)
ENGB_THEMA
[Raw transfer]




83 HHSearch 95.1062%-108 - C1 -1SVI 6.7 ENGB_BACSU
2 PsiBlast_PDB 94.2462%-111 - C1 -1SVI 6.6 ENGB_BACSU
1 PsiBlast_PDB 93.8962%-111 - C1 -1SUL - ENGB_BACSU -
21 PsiBlast_CBE 90.4962% -95 - C1 -1SVW 7.5 ENGB_BACSU
84 HHSearch 84.8941% -88 - C1 -3PQC 7.7 ENGB_THEMA
5 PsiBlast_PDB 84.1242%-116 - C1 -3PR1 - ENGB_THEMA -
4 PsiBlast_PDB 83.5542% -90 - C1 -3PQC 7.7 ENGB_THEMA
23 PsiBlast_CBE 82.8442% -98 - C1 -3PQC 6.9 ENGB_THEMA
22 PsiBlast_CBE 82.1440%-103 - C1 -1PUI - ENGB_ECOLI -
3 PsiBlast_PDB 80.2840% -98 - C1 -1PUI - ENGB_ECOLI -
85 HHSearch 77.7938% -88 - C1 -1PUI - ENGB_ECOLI -
9 PsiBlast_PDB 77.5431%-100 - C1 -3R9W - ERA_AQUAE -
6 PsiBlast_PDB 77.3632% -80 - C1 -4DHE - ENGB_BURTA -
11 PsiBlast_PDB 76.7031% -95 - C1 -3IEV - ERA_AQUAE -
10 PsiBlast_PDB 76.2131% -92 - C1 -3R9X - ERA_AQUAE -
107 Fugue 76.1134% -90 - C1 -1PUI - ENGB_ECOLI -
86 HHSearch 73.7029% -83 * C1 *3IEV - ERA_AQUAE -
90 HHSearch 70.2623%-103 - C1 -1MKY - DER_THEMA -
88 HHSearch 64.9327% -68 - C1 -1WF3 - ERA_THET8 -
114 Fugue 64.3823% -86 - C1 -1XZP - MNME_THEMA -