@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1434: (2015-12-07 )
MKRKEIIDDVTMKRAITRITYEIIERNKNLDNIVLAGIKTRGVFLAKRIQERLKQLENLDIPVGELDTKPFRDDMKVEVDTTTMPVDITDKDIILIDDVLYTGRTIRAAIDNLVSLGRPSRVSLAVLIDRGHRELPIRADYVGKNIPTSQFEEILVEVMEHDGYDRVSIIDPS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5GP_C_10(4P86)
?
[Raw transfer]



5GP_B_7(4P86)
?
[Raw transfer]



5GP_D_11(4P86)
?
[Raw transfer]



U5P_D_8(4P83)
?
[Raw transfer]



U5P_A_5(4P83)
?
[Raw transfer]



5GP_A_5(4P86)
?
[Raw transfer]



U5P_A_3(2IGB)
PYRR_BACCL
[Raw transfer]



U5P_C_7(4P83)
?
[Raw transfer]



U5P_B_6(4P83)
?
[Raw transfer]



5GP_A_5(1XZ8)
PYRR_BACCL
[Raw transfer]



U5P_B_4(2IGB)
PYRR_BACCL
[Raw transfer]



U5P_B_7(1XZ8)
PYRR_BACCL
[Raw transfer]



GOL_C_8(4P81)
?
[Raw transfer]



3GP_A_6(1XZ8)
PYRR_BACCL
[Raw transfer]
28 PsiBlast_CBE 91.3854%-126 - C3 -4P83 7.5 ?
9 PsiBlast_PDB 91.1854%-132 - C3 -4P83 5.3 ?
21 PsiBlast_CBE 91.0961%-121 - C3 -4P81 - ? -
25 PsiBlast_CBE 91.0555%-127 - C3 -1XZN - PYRR_BACCL -
11 PsiBlast_PDB 90.7654%-128 - C3 -4P86 7.1 ?
22 PsiBlast_CBE 90.6561%-122 - C3 -4P81 2.8 ?
24 PsiBlast_CBE 90.5455%-121 - C3 -2IGB 6.3 PYRR_BACCL
1 PsiBlast_PDB 90.3561%-124 * C3 *4P81 - ? -
32 PsiBlast_CBE 90.2154%-126 - C3 -4P86 6.7 ?
7 PsiBlast_PDB 90.1255%-120 - C3 -2IGB 6.5 PYRR_BACCL
6 PsiBlast_PDB 89.9955%-127 - C3 -1XZN - PYRR_BACCL -
4 PsiBlast_PDB 89.6655%-122 - C3 -1NON - PYRR_BACCL -
30 PsiBlast_CBE 89.3154%-128 - C3 -4P83 5.6 ?
26 PsiBlast_CBE 89.2955%-122 - C3 -1XZ8 4.9 PYRR_BACCL
29 PsiBlast_CBE 89.2454%-125 - C3 -4P83 5.2 ?
23 PsiBlast_CBE 89.1961%-122 - C3 -4P81 - ? -
8 PsiBlast_PDB 89.1255%-124 - C3 -4P80 - ? -
33 PsiBlast_CBE 88.9154%-127 - C3 -4P86 6.4 ?
2 PsiBlast_PDB 88.6461%-113 - C3 -4P3K - ? -
3 PsiBlast_PDB 88.6361%-116 - C3 -4P84 - ? -
5 PsiBlast_PDB 87.5555%-120 - C3 -1XZ8 4.9 PYRR_BACCL
31 PsiBlast_CBE 87.4754%-124 - C3 -4P86 6.7 ?