@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1810: (2015-12-10 )
MKTTKVFSVLSLSVAAFMMTACQSNHSTKKADMSPDKVEQKTKFKNISLSSNKLLAKENTMSVLWYQNSAEAKALYLQGYNVAKMKLDDWLQKPSEKPYSIILDLDETVLDNSPYQAKNIKDGSSFTPESWDKWVQKKSAKAVAGAKAFLKYANEKGIKIYYVSDRTDAQVDATKENLEKEGIPVQGKDHLLFLKKGMKSKESRRQAVQKDTNLIMLFGDNLVDFADFSKSSSTDREQLLTKLQSEFGSKFIVFPNPMYGSWESAIYQGKHLDVQKQLKERQKMLHSYD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_2(3OCV)
HEL_HAEIN
[Raw transfer]




AMP_A_3(3SF0)
HEL_HAEIN
[Raw transfer]




NMN_A_3(3OCU)
HEL_HAEIN
[Raw transfer]




NMN_A_3(3OCU)
HEL_HAEIN
[Raw transfer]




SRA_A_3(3OCZ)
HEL_HAEIN
[Raw transfer]




2AM_A_2(3OCX)
HEL_HAEIN
[Raw transfer]




3AM_A_3(3OCW)
HEL_HAEIN
[Raw transfer]




WO4_B_6(2I34)
?
[Raw transfer]




WO4_A_5(2I34)
?
[Raw transfer]




WO4_A_3(3ET5)
?
[Raw transfer]




PG4_A_3(3ET4)
?
[Raw transfer]




PG4_A_4(3ET5)
?
[Raw transfer]




21 PsiBlast_CBE 94.9646% -51 - C2 -2I34 2.8 ?
22 PsiBlast_CBE 94.9546% -51 - C2 -2I33 - ? -
1 PsiBlast_PDB 94.1746% -51 - C2 -2I33 - ? -
2 PsiBlast_PDB 93.3146% -50 - C2 -2I34 2.8 ?
26 HHSearch 92.2446% -45 - C2 -2I33 - ? -
3 PsiBlast_PDB 86.9834% -54 - C2 -3PCT - ? -
27 HHSearch 85.0633% -43 - C2 -3PCT - ? -
4 PsiBlast_PDB 81.8332% -34 - C2 -3OCY - HEL_HAEIN -
12 PsiBlast_PDB 81.5132% -35 - C2 -3SF0 5.9 HEL_HAEIN
11 PsiBlast_PDB 81.3532% -38 - C2 -3OCX 4.8 HEL_HAEIN
10 PsiBlast_PDB 81.3132% -34 - C2 -3OCW 5.4 HEL_HAEIN
5 PsiBlast_PDB 81.2332% -34 - C2 -3OCZ 5.5 HEL_HAEIN
9 PsiBlast_PDB 80.9332% -34 - C2 -3OCV 5.8 HEL_HAEIN
6 PsiBlast_PDB 80.8032% -37 - C2 -3ET4 1.8 ?
8 PsiBlast_PDB 80.7132% -33 - C2 -3OCU 5.3 HEL_HAEIN
7 PsiBlast_PDB 79.9532% -35 - C2 -3ET5 2.7 ?
25 HHSearch 78.8531% -36 - C2 -3OCU 5.3 HEL_HAEIN
47 Fugue 56.5626% -7 - C2 -4FYP - VSP1_ARATH -
13 PsiBlast_PDB 51.2529% -31 - C2 -4FYP - VSP1_ARATH -
15 PsiBlast_PDB 50.0523% -30 - C2 -2B8J - APHA_ECOLI -