@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0148: (2016-04-19 )
MPGVQDRVIVVTGAGGGLGREYALTLAGEGASVVVNDLGGARDGTGAGSAMADEVVAEIRDKGGRAVANYDSVATEDGAANIIKTALDEFGAVHGVVSNAGILRDGTFHKMSFENWDAVLKVHLYGGYHVLRAAWPHFREQSYGRVVVATSTSGLFGNFGQTNYGAAKLGLVGLINTLALEGAKYNIHANALAPIAATRMTQDILPPEVLEKLTPEFVAPVVAYLCTEECADNASVYVVGGGKVQRVALFGNDGANFDKPPSVQDVAARWAEITDLSGAKIAGFKL

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_C_7(4IIV)
?
[Raw transfer]



NAP_A_5(4IIV)
?
[Raw transfer]



NAP_B_6(4IIU)
?
[Raw transfer]



NAP_A_5(4IIU)
?
[Raw transfer]



NAP_D_8(4IIU)
?
[Raw transfer]



NAP_C_7(4IIU)
?
[Raw transfer]



NAP_D_8(4IIV)
?
[Raw transfer]



NAP_B_6(4IIV)
?
[Raw transfer]



CAA_A_7(3VZS)
PHBB_CUPNH
[Raw transfer]



CAA_D_16(3VZS)
PHBB_CUPNH
[Raw transfer]



CAA_C_13(3VZS)
PHBB_CUPNH
[Raw transfer]



GOL_A_11(4KZP)
?
[Raw transfer]



CAA_B_10(3VZS)
PHBB_CUPNH
[Raw transfer]



DIO_A_9(3VZP)
PHBB_CUPNH
[Raw transfer]



CAA_A_3(4N5M)
PHBB_CUPNH
[Raw transfer]



GOL_B_10(4N5M)
PHBB_CUPNH
[Raw transfer]



DIO_B_13(3VZP)
PHBB_CUPNH
[Raw transfer]



DIO_C_16(3VZP)
PHBB_CUPNH
[Raw transfer]



EDO_B_12(4KZP)
?
[Raw transfer]
24 PsiBlast_CBE 97.6652%-107 - C1 -1ZBQ - DHB4_HUMAN -
25 PsiBlast_CBE 97.2652%-104 - C1 -1ZBQ - DHB4_HUMAN -
23 PsiBlast_CBE 97.1152%-107 - C1 -1ZBQ - DHB4_HUMAN -
1 PsiBlast_PDB 96.8152%-106 - C1 -1ZBQ - DHB4_HUMAN -
2 PsiBlast_PDB 95.5351%-105 - C1 -1GZ6 - DHB4_RAT -
22 PsiBlast_CBE 95.3152%-106 - C1 -1ZBQ - DHB4_HUMAN -
21 PsiBlast_CBE 95.2252%-105 - C1 -1ZBQ - DHB4_HUMAN -
107 Fugue 93.4549% -99 - C1 -1GZ6 - DHB4_RAT -
4 PsiBlast_PDB 85.0847%-111 - C1 -2ET6 - FOX2_CANTR -
122 HHSearch 82.1246%-106 - C1 -2ET6 - FOX2_CANTR -
117 HHSearch 76.3741%-108 - C1 -2ET6 - FOX2_CANTR -
5 PsiBlast_PDB 76.1041%-103 - C1 -3QLJ - ? -
26 PsiBlast_CBE 75.6941%-105 - C1 -3QLJ - ? -
27 PsiBlast_CBE 75.4841% -99 - C1 -3QLJ - ? -
30 PsiBlast_CBE 74.5641%-103 - C1 -3QLJ - ? -
28 PsiBlast_CBE 74.5541%-101 - C1 -3QLJ - ? -
29 PsiBlast_CBE 74.0741% -98 - C1 -3QLJ - ? -
3 PsiBlast_PDB 72.7649%-108 - C1 -3OML - DHB4_DROME -
7 PsiBlast_PDB 68.9737%-100 - C1 -4KZP 3.2 ?
20 PsiBlast_PDB 67.6630%-110 - C1 -2C07 - ? -
32 PsiBlast_CBE 66.7037%-102 - C1 -4KZP 2.3 ?
97 PsiBlast_CBE 63.4031% -97 - C1 -3VZP 3.0 PHBB_CUPNH
96 PsiBlast_CBE 63.1231% -92 - C1 -3VZP 2.9 PHBB_CUPNH
93 PsiBlast_CBE 62.3131% -98 - C1 -3VZS 3.0 PHBB_CUPNH
92 PsiBlast_CBE 62.1531% -95 - C1 -3VZS 3.8 PHBB_CUPNH
90 PsiBlast_CBE 62.1431% -96 - C1 -3VZS 3.9 PHBB_CUPNH
91 PsiBlast_CBE 61.5731% -98 - C1 -3VZS 3.1 PHBB_CUPNH
105 PsiBlast_CBE 61.1732% -99 - C1 -4N5M 4.5 PHBB_CUPNH
104 PsiBlast_CBE 60.6832% -98 - C1 -4N5M 2.8 PHBB_CUPNH
95 PsiBlast_CBE 60.0731% -97 - C1 -3VZP 2.0 PHBB_CUPNH
78 PsiBlast_CBE 42.8837% -75 - C1 -4IIV 8.8 ?
76 PsiBlast_CBE 42.6937% -72 - C1 -4IIV 8.7 ?
81 PsiBlast_CBE 42.0437% -70 - C1 -4IIU 9.3 ?
79 PsiBlast_CBE 42.0437% -72 - C1 -4IIU 9.2 ?
77 PsiBlast_CBE 41.8837% -71 - C1 -4IIV 8.9 ?
75 PsiBlast_CBE 41.5737% -73 - C1 -4IIV 8.4 ?
80 PsiBlast_CBE 41.5137% -71 - C1 -4IIU 9.1 ?
82 PsiBlast_CBE 40.3537% -71 - C1 -4IIU 9.2 ?