@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2616: (2016-02-09 )
MSEVKHSRLIILGSGPAGYTAAVYAARANLKPVVITGIQPGGQLTTTTEVDNWPGDVEGLTGPALMTRMQQHAERFDTEIVYDHIHTAELQQRPFTLKGDSGTYTCDALIIATGASAQYLGMSSEEAFMGKGVSACATCDGFFYRNQVVCVVGGGNTAVEEALYLANIAKEVHLIHRRDKLRSEKILQDKLFDKAENGNVHLHWNTTLDEVLGDASGVTGVRLKSTIDGSTSELSLAGVFIAIGHKPNTDLFQGQLEMRDGYLRIHGGSEGNATQTSIEGVFAAGDVADHVYRQAITSAGAGCMAALDAEKYLDDH

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_4(3CTY)
?
[Raw transfer]




FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]




FAD_B_7(2A87)
TRXB_MYCTU
[Raw transfer]




FAD_C_3(1CL0)
TRXB_ECOLI
[Raw transfer]




FAD_B_4(2Q7V)
?
[Raw transfer]




FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]




FDA_A_2(4JNQ)
?
[Raw transfer]




FAD_A_6(4CCR)
?
[Raw transfer]




FAD_B_8(4CCR)
?
[Raw transfer]




FAD_B_7(4A5L)
?
[Raw transfer]




FAD_A_5(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_C_10(4CCR)
?
[Raw transfer]




FAD_A_6(4CCQ)
?
[Raw transfer]




FAD_E_5(1VDC)
TRXB1_ARATH
[Raw transfer]




FAD_A_5(4A5L)
?
[Raw transfer]




FAD_D_12(4CCR)
?
[Raw transfer]




FAD_A_5(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_B_15(4CBQ)
?
[Raw transfer]




FAD_A_3(4UP3)
?
[Raw transfer]




FAD_B_6(2WHD)
?
[Raw transfer]




FAD_B_4(2Q7V)
?
[Raw transfer]




FAD_A_8(4CBQ)
?
[Raw transfer]




FAD_B_5(3D8X)
TRXB1_YEAST
[Raw transfer]




FAD_A_3(3D8X)
TRXB1_YEAST
[Raw transfer]




FAD_B_5(4UP3)
?
[Raw transfer]




FAD_B_10(4CCQ)
?
[Raw transfer]




FAD_E_5(1VDC)
TRXB1_ARATH
[Raw transfer]




FAD_A_5(4A65)
?
[Raw transfer]




FAD_C_10(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_A_3(2Q7V)
?
[Raw transfer]




FAD_B_7(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_B_10(4A65)
?
[Raw transfer]




FAD_A_5(2A87)
TRXB_MYCTU
[Raw transfer]




FAD_A_3(2WHD)
?
[Raw transfer]




FAD_D_13(3ITJ)
TRXB1_YEAST
[Raw transfer]




FAD_B_7(2A87)
TRXB_MYCTU
[Raw transfer]




CIT_C_12(3ITJ)
TRXB1_YEAST
[Raw transfer]




GOL_A_15(4YKF)
?
[Raw transfer]




ACY_B_9(3F8P)
?
[Raw transfer]




GOL_A_14(4YKG)
?
[Raw transfer]




ACY_B_8(3F8D)
?
[Raw transfer]




CIT_D_14(3ITJ)
TRXB1_YEAST
[Raw transfer]




1 PsiBlast_PDB 98.9472%-116 - C2 -1CL0 13.4 TRXB_ECOLI
3 PsiBlast_PDB 98.8471%-114 - C2 -1TRB 13.2 TRXB_ECOLI
93 HHSearch 98.5871%-113 - C2 -1TRB 13.2 TRXB_ECOLI
22 PsiBlast_CBE 94.6071%-109 - C2 -1F6M - TRXB_ECOLI -
21 PsiBlast_CBE 94.6071%-108 - C2 -1F6M - TRXB_ECOLI -
2 PsiBlast_PDB 94.3971%-109 - C2 -1F6M - TRXB_ECOLI -
23 PsiBlast_CBE 94.0471%-107 - C2 -1F6M - TRXB_ECOLI -
4 PsiBlast_PDB 92.9657%-113 - C2 -4JNQ 13.4 ?
37 PsiBlast_CBE 85.3743%-114 - C2 -2WHD 12.2 ?
9 PsiBlast_PDB 84.9644%-109 - C2 -1VDC 11.6 TRXB1_ARATH
15 PsiBlast_PDB 84.7343%-112 - C2 -2WHD 12.9 ?
29 PsiBlast_CBE 83.6743%-113 - C2 -2Q7V 12.2 ?
86 HHSearch 83.5945%-108 - C2 -3ITJ 10.4 TRXB1_YEAST
91 HHSearch 83.5445%-106 - C2 -1VDC 11.5 TRXB1_ARATH
8 PsiBlast_PDB 83.5243%-113 - C2 -2Q7V 12.4 ?
89 HHSearch 83.5043%-108 - C2 -2Q7V Error ?
26 PsiBlast_CBE 83.1544%-109 - C2 -3ITJ 11.3 TRXB1_YEAST
34 PsiBlast_CBE 82.9341%-109 - C2 -4CBQ 12.4 ?
14 PsiBlast_PDB 82.8341%-113 - C2 -4CCR 12.5 ?
32 PsiBlast_CBE 82.5841%-112 - C2 -4CCR 12.3 ?
28 PsiBlast_CBE 82.4543%-111 - C2 -3D8X 12.4 TRXB1_YEAST
36 PsiBlast_CBE 82.1441%-110 - C2 -4A5L 12.9 ?
33 PsiBlast_CBE 82.0941%-107 - C2 -4CCQ 12.8 ?
38 PsiBlast_CBE 81.9940%-109 - C2 -4UP3 12.4 ?
7 PsiBlast_PDB 81.9743%-110 - C2 -3D8X 12.5 TRXB1_YEAST
35 PsiBlast_CBE 81.8041%-107 - C2 -4A65 12.6 ?
27 PsiBlast_CBE 81.5944%-107 - C2 -3ITJ 11.5 TRXB1_YEAST
16 PsiBlast_PDB 81.4040%-111 - C2 -4UP3 12.0 ?
12 PsiBlast_PDB 81.0641%-110 - C2 -4CBQ 12.3 ?
6 PsiBlast_PDB 80.9644%-105 - C2 -3ITJ 10.7 TRXB1_YEAST
11 PsiBlast_PDB 80.7941%-112 - C2 -4A65 12.6 ?
10 PsiBlast_PDB 80.6541%-111 - C2 -4A5L 12.3 ?
31 PsiBlast_CBE 80.6341%-111 - C2 -4CCR 12.0 ?
92 HHSearch 80.6045%-107 - C2 -2A87 Error TRXB_MYCTU
13 PsiBlast_PDB 80.1641%-109 - C2 -4CCQ 12.5 ?
25 PsiBlast_CBE 80.0344%-109 - C2 -3ITJ 10.9 TRXB1_YEAST
50 PsiBlast_CBE 79.8534%-113 - C2 -3F8P 3.7 ?
54 PsiBlast_CBE 79.2134%-114 * C2 *3F8D 3.9 ?
24 PsiBlast_CBE 78.9445%-100 - C2 -2A87 11.2 TRXB_MYCTU
5 PsiBlast_PDB 78.6845%-100 - C2 -2A87 10.1 TRXB_MYCTU
97 HHSearch 67.3530%-105 - C2 -3CTY Error ?
59 PsiBlast_CBE 66.7431%-112 - C2 -4YKG 3.0 ?
57 PsiBlast_CBE 65.7931%-108 - C2 -4YKF 2.0 ?
30 PsiBlast_CBE 58.8141% -96 - C2 -4CCR 12.0 ?