@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3859: (2016-02-21 )
MSEPLILDAPNADACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDLALDERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYPMGHEVSLEEIHDIGAWLRKRL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MES_C_6(3CN7)
?
[Raw transfer]



MES_B_5(3CN7)
?
[Raw transfer]



PMS_C_3(1AUR)
EST2_PSEFL
[Raw transfer]



PMS_D_4(1AUR)
EST2_PSEFL
[Raw transfer]



3CM_A_3(4FTW)
?
[Raw transfer]



PEG_A_6(4FHZ)
?
[Raw transfer]



2PE_A_3(3CN9)
?
[Raw transfer]



2PE_A_3(3CN9)
?
[Raw transfer]



2PE_B_5(3CN9)
?
[Raw transfer]
2 PsiBlast_PDB 97.81100%-132 - C1 -3CN9 3.9 ?
21 PsiBlast_CBE 97.74100%-130 - C1 -3CN9 3.8 ?
23 PsiBlast_CBE 97.36100%-128 - C1 -3CN7 1.9 ?
1 PsiBlast_PDB 96.86100%-130 - C1 -3CN7 - ? -
22 PsiBlast_CBE 96.75100%-129 - C1 -3CN7 2.1 ?
53 HHSearch 95.2696%-129 - C1 -3CN9 3.9 ?
24 PsiBlast_CBE 86.3964%-124 - C1 -1AUR 4.0 EST2_PSEFL
4 PsiBlast_PDB 86.2064%-125 - C1 -1AUR 2.7 EST2_PSEFL
3 PsiBlast_PDB 85.8464%-130 - C1 -1AUO - EST2_PSEFL -
74 Fugue 85.4664%-129 - C1 -1AUO - EST2_PSEFL -
75 Fugue 84.2464%-125 - C1 -1AUO - EST2_PSEFL -
54 HHSearch 82.3563%-123 * C1 *1AUO - EST2_PSEFL -
26 PsiBlast_CBE 72.7835%-115 - C1 -1FJ2 - LYPA1_HUMAN -
6 PsiBlast_PDB 72.1735%-114 - C1 -1FJ2 - LYPA1_HUMAN -
7 PsiBlast_PDB 72.0826%-124 - C1 -3U0V - LYPL1_HUMAN -
56 HHSearch 71.1834%-111 - C1 -1FJ2 - LYPA1_HUMAN -
5 PsiBlast_PDB 69.0240%-112 - C1 -4F21 - ? -
25 PsiBlast_CBE 68.9240%-120 - C1 -4F21 - ? -
10 PsiBlast_PDB 68.3126%-107 - C1 -4H0C - ? -
57 HHSearch 67.9925%-114 - C1 -3U0V - LYPL1_HUMAN -
8 PsiBlast_PDB 64.7932%-106 - C1 -4FHZ 2.1 ?
9 PsiBlast_PDB 64.3432%-102 - C1 -4FTW 3.6 ?